View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_65 (Length: 308)
Name: NF19658_low_65
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 1881350 - 1881072
Alignment:
| Q |
13 |
aatatcctccgtgtcgtccaagttgatatcaagaattctttgatagagtcctctctccagcgttttgagagacaggatgttgcaaagatttgttttgtgg |
112 |
Q |
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| T |
1881350 |
aatatcctccgtgtcgtccaagttgatatcaagaattctttgatagagtcctctctccagcgttttgagagacaggatgttgcaaagatttgttttgtgg |
1881251 |
T |
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| Q |
113 |
gcaaaagagagaggatgtgacatagtaattcctgataattggacatgaaagttgctctttaggcacctaccatttgctaacaaacacctcgttgctaaca |
212 |
Q |
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| T |
1881250 |
gcaaaagagagaggatgtgacatagtaattcctgataattggacatgaaagttgctctttaggcacctaccatttgctaacaaacacctcgttgctaaca |
1881151 |
T |
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| Q |
213 |
atctcatagtccaatgagtagccgcaataaaaccaataagggtatcctcaactttatagtgataagtctatgaaattac |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1881150 |
atctcatagtccaatgagtagccgcaataaaaccaataagggtatcctcaactttatagtgataagtctatgaaattac |
1881072 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 4140915 - 4140799
Alignment:
| Q |
18 |
cctccgtgtcgtccaagttgatatcaagaattctttgatagagtcctctctccagcgttttgagagacaggatgttgcaaagatttgttttgtgggcaaa |
117 |
Q |
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||||| ||||||||||||||||||| |||||||||||| ||| | ||||||||| |||||||| ||||| | |||||||||||||| |||||| |
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| T |
4140915 |
cctccatgtcgtccaagttgatatcgagaattctttgacggag--cagtctccagcgccttgagagaagggatgcaacgaagatttgttttgtaggcaaa |
4140818 |
T |
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| Q |
118 |
agagagaggatgtgacata |
136 |
Q |
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|||| |||||| |||||| |
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| T |
4140817 |
cgagacaggatgcgacata |
4140799 |
T |
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