View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_69 (Length: 305)
Name: NF19658_low_69
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_69 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 45126154 - 45126416
Alignment:
| Q |
16 |
atgtttatgtttcctgagacgtccattcctggtgatgcctacaattggaattgtttcagctatggagcttatttttgcaatcatgtttgttgcacttttg |
115 |
Q |
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| T |
45126154 |
atgtttatgtttcctgagacgtccattcctggtgatgcctacaattggaattgtttcagctatggagcttatttttgcaatcatgtttgttgcacttttg |
45126253 |
T |
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| Q |
116 |
atatggtccctttacaattacttaagtatcagtttcgctcacctccatatgcacaaagaaggcgagaaagtgtaaataatttatctaaacttttctttta |
215 |
Q |
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| T |
45126254 |
atatggtccctttacaattacttaagtatcagttttgctcacctccatatgcacaaagaaggcgaaaaagtgtaaa---------taaacttttctttta |
45126344 |
T |
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| Q |
216 |
acttcatgttaannnnnnncttaaccatccgattcttagagtctggagttcgtcaaagacaaggaagtaaat |
287 |
Q |
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| T |
45126345 |
acttcatgttaatttttttcttaaccatccgattcttagagtctggagttcgtcaaagacaaggaagtaaat |
45126416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 45109169 - 45109348
Alignment:
| Q |
16 |
atgtttatgtttcctgagacgtccattcctggtgatgcctacaattggaattgtttcagctatggagcttatttttgcaatcatgtttgttgcacttttg |
115 |
Q |
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||||||| | ||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||| | ||||||||| |||||| ||| |
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| T |
45109169 |
atgtttaggcttcctgagacgtccattcctggttatgtctccaattggaattgtttcagctatggagcttatttttgtactcatgtttgctgcactcttg |
45109268 |
T |
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| Q |
116 |
atatggtccctttacaattacttaagtatcagtttcgctcacctccatatgcacaaagaaggcgagaaagtgtaaataat |
195 |
Q |
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| T |
45109269 |
atatggtccctttccaattacttacataccggtttcgatcacctccgcatgcacaaacaagatgagaaaatgtaaataat |
45109348 |
T |
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