View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19658_low_7 (Length: 640)

Name: NF19658_low_7
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19658_low_7
NF19658_low_7
[»] chr6 (11 HSPs)
chr6 (269-636)||(2357454-2357814)
chr6 (39-249)||(2356381-2356592)
chr6 (120-220)||(2306465-2306565)
chr6 (391-596)||(2362891-2363096)
chr6 (120-218)||(2366767-2366865)
chr6 (120-217)||(2362157-2362254)
chr6 (416-596)||(2351285-2351465)
chr6 (438-596)||(2368684-2368842)
chr6 (143-219)||(2338806-2338882)
chr6 (440-507)||(2307175-2307242)
chr6 (144-219)||(2349847-2349922)
[»] chr3 (2 HSPs)
chr3 (391-596)||(4305589-4305794)
chr3 (120-217)||(4303928-4304025)
[»] chr4 (1 HSPs)
chr4 (92-220)||(5805414-5805545)


Alignment Details
Target: chr6 (Bit Score: 322; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 269 - 636
Target Start/End: Original strand, 2357454 - 2357814
Alignment:
Q  269 agtggagggccaatggaacagaaagaaaaactctatacgaacttaccaaacactttgcttcaattgatacatgtttgaattttatttaaacttactctta 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2357454 agtggagggccaatggaacagaaagaaaaactctatacgaacttaccaaacactttgcttcaattgatacatgtttgaattttatttaaacttactctta 2357553  T
Q  369 tacacatttttataaaattttcacttcatttacagtcactaattgcaggaggaattgacacaagtgctattacccttacttgggcaatatgtttgttatt 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2357554 tacacatttttataaaattttcacttcatttacagtcactaattgcaggaggaattgacacaagtgctattacccttacttgggcaatatgtttgttact 2357653  T
Q  469 gaaaaatcctcatacattggaaaaagcaaaagcagaacttgacttccacgttggaagagataaatgtgtaacaaagtcggatataaataagttggtgtac 568  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2357654 gaaaaatcctcatacattggaaaaagcaaaagcagaacttgacttccacgttggaagagataaatgtgtaacaaagtcggatataaacaagttggtgtac 2357753  T
Q  569 cttcaagtgataatcaaagaaaccctaatggctaagattatatccagctggtcctctctctgctcctc 636  Q
    ||||||| ||||||||||||||||       |||||||||||||||| ||||||||||||||| ||||    
T  2357754 cttcaagcgataatcaaagaaacc-------ctaagattatatccagttggtcctctctctgcacctc 2357814  T

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Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 39 - 249
Target Start/End: Original strand, 2356381 - 2356592
Alignment:
Q  39 cttctaaggaattggacatgattttaaatgaatggttgaaggagcgtcgtaatagaacattgaatgaaaaggttgatcgtgatcaagatttcatggacgc 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2356381 cttctaaggaattggacatgattttaaatgaatggttgaaggagcgtcgtaatagaacattgaatgaaaaggttgatcgtgatcaagatttcatggacgc 2356480  T
Q  139 attgctttcattgtttgatggaacaacaattgaaggg-tttgatgccgataccacaatcaaagccacgatgttggtatgtatactttcattatattcgct 237  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2356481 attgctttcactgtttgatggaacaacaattgaagggttttgatgccgataccacaatcaaagccacgatgttggtatgtatactttcattatattcgct 2356580  T
Q  238 ttatcaatacaa 249  Q
    ||||||||||||    
T  2356581 ttatcaatacaa 2356592  T

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Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 2306465 - 2306565
Alignment:
Q  120 atcaagatttcatggacgcattgctttcattgtttgatggaacaacaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgtat 219  Q
    |||||||| ||||||| |  |||||||||||| ||||||||||||| || |||||||||||||  ||||||| ||||||||||||||| |||||||||||    
T  2306465 atcaagatatcatggatgtgttgctttcattgcttgatggaacaaccatcgaagggtttgatggtgataccataatcaaagccacgatattggtatgtat 2306564  T
Q  220 a 220  Q
    |    
T  2306565 a 2306565  T

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Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 391 - 596
Target Start/End: Original strand, 2362891 - 2363096
Alignment:
Q  391 acttcatttacagtcactaattgcaggaggaattgacacaagtgctattacccttacttgggcaatatgtttgttattgaaaaatcctcatacattggaa 490  Q
    ||||| ||||||| ||||||| |  ||||||||||| |||| |    |||||||||| |||||||||||||||||  | | ||||||||  | |||| ||    
T  2362891 acttcttttacagacactaatcgggggaggaattgaaacaactagcgttacccttacatgggcaatatgtttgttgcttagaaatcctctaatattgaaa 2362990  T
Q  491 aaagcaaaagcagaacttgacttccacgttggaagagataaatgtgtaacaaagtcggatataaataagttggtgtaccttcaagtgataatcaaagaaa 590  Q
    |||||||||| |||||||||    || ||||||| ||| |  ||||||| |||||| |||||| | |||||||||||||||||||  ||| |||||||||    
T  2362991 aaagcaaaagaagaacttgatgctcaagttggaaaagagaggtgtgtaagaaagtcagatatagacaagttggtgtaccttcaagccatagtcaaagaaa 2363090  T
Q  591 ccctaa 596  Q
    | ||||    
T  2363091 cactaa 2363096  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 2366767 - 2366865
Alignment:
Q  120 atcaagatttcatggacgcattgctttcattgtttgatggaacaacaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgta 218  Q
    ||||||| |||||||| |   |||||||||||||||||||||||||||||||||| |||||| | ||||||| ||||||||||||  | ||||||||||    
T  2366767 atcaagacttcatggatgtgatgctttcattgtttgatggaacaacaattgaaggatttgattctgataccataatcaaagccacagtattggtatgta 2366865  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 2362157 - 2362254
Alignment:
Q  120 atcaagatttcatggacgcattgctttcattgtttgatggaacaacaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgt 217  Q
    ||||||| |||||||| || |||||||||||| |||||| |||| |||||||||||| |||| | ||||| ||||||||||| || || |||||||||    
T  2362157 atcaagacttcatggatgccttgctttcattgcttgatgaaacaccaattgaagggtgtgattctgatactacaatcaaagcgacaatattggtatgt 2362254  T

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Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 416 - 596
Target Start/End: Original strand, 2351285 - 2351465
Alignment:
Q  416 ggaggaattgacacaagtgctattacccttacttgggcaatatgtttgttattgaaaaatcctcatacattggaaaaagcaaaagcagaacttgacttcc 515  Q
    ||||||| ||||||||||  | |||| ||||| ||||||||||||||  ||||||||||||||| |  |||| |||||||||||| ||||||||||   |    
T  2351285 ggaggaagtgacacaagtagtgttactcttacatgggcaatatgtttactattgaaaaatcctcttgtattgaaaaaagcaaaagaagaacttgacactc 2351384  T
Q  516 acgttggaagagataaatgtgtaacaaagtcggatataaataagttggtgtaccttcaagtgataatcaaagaaaccctaa 596  Q
    ||||||| | ||| |    |||||   ||||||||||   ||||||||| ||||||||||  ||| | |||||||||||||    
T  2351385 acgttggcaaagaaaggcttgtaaacgagtcggatattggtaagttggtataccttcaagctatagtaaaagaaaccctaa 2351465  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 438 - 596
Target Start/End: Original strand, 2368684 - 2368842
Alignment:
Q  438 ttacccttacttgggcaatatgtttgttattgaaaaatcctcatacattggaaaaagcaaaagcagaacttgacttccacgttggaagagataaatgtgt 537  Q
    |||||||||| |||||||||||||||||| | | ||||||||  | ||||||||||||||||| |||||||||    || ||||||| ||| |  |||||    
T  2368684 ttacccttacatgggcaatatgtttgttacttagaaatcctctaatattggaaaaagcaaaagaagaacttgatactcaagttggaaaagagaggtgtgt 2368783  T
Q  538 aacaaagtcggatataaataagttggtgtaccttcaagtgataatcaaagaaaccctaa 596  Q
    || | || | || ||| | ||||||||||| |||||||  ||  |||||||||||||||    
T  2368784 aagagagacagacatagacaagttggtgtatcttcaagccattgtcaaagaaaccctaa 2368842  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 2338806 - 2338882
Alignment:
Q  143 ctttcattgtttgatggaacaacaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgtat 219  Q
    ||||||||| ||||||||||||| |||||||||||||| |  ||||||| ||||||||||||  | |||||||||||    
T  2338806 ctttcattgcttgatggaacaaccattgaagggtttgacggtgataccataatcaaagccacactattggtatgtat 2338882  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 440 - 507
Target Start/End: Original strand, 2307175 - 2307242
Alignment:
Q  440 acccttacttgggcaatatgtttgttattgaaaaatcctcatacattggaaaaagcaaaagcagaact 507  Q
    |||||||| |||||| |||||||| ||||||| ||||||| |  | ||||||||||||||| ||||||    
T  2307175 acccttacatgggcactatgtttgctattgaacaatcctcttgtaatggaaaaagcaaaagaagaact 2307242  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 2349847 - 2349922
Alignment:
Q  144 tttcattgtttgatggaacaacaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgtat 219  Q
    |||||||| ||||||||| ||| || ||||||||||||   ||||||| ||||||||| || || |||||||||||    
T  2349847 tttcattgcttgatggaaaaaccatggaagggtttgattgtgataccataatcaaagcaacaatattggtatgtat 2349922  T

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Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 391 - 596
Target Start/End: Original strand, 4305589 - 4305794
Alignment:
Q  391 acttcatttacagtcactaattgcaggaggaattgacacaagtgctattacccttacttgggcaatatgtttgttattgaaaaatcctcatacattggaa 490  Q
    ||||| |||| || |||| |||||||||||| ||||||||| |  | | |||||||  |||||||| ||||||||| || ||||||||| |  | | |||    
T  4305589 acttcgtttaaagacactgattgcaggaggagttgacacaactagtgtcacccttatatgggcaatgtgtttgttactggaaaatcctcttgtaatagaa 4305688  T
Q  491 aaagcaaaagcagaacttgacttccacgttggaagagataaatgtgtaacaaagtcggatataaataagttggtgtaccttcaagtgataatcaaagaaa 590  Q
    |||||| ||| |||||||||| |||| ||||| | ||| |  ||||||| | ||||||||||| | |||||||| |||||||||| |||| |||||||||    
T  4305689 aaagcacaagaagaacttgacatccaagttggcaaagagaggtgtgtaaaagagtcggatatagacaagttggtataccttcaagcgatagtcaaagaaa 4305788  T
Q  591 ccctaa 596  Q
    ||||||    
T  4305789 ccctaa 4305794  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 217
Target Start/End: Original strand, 4303928 - 4304025
Alignment:
Q  120 atcaagatttcatggacgcattgctttcattgtttgatggaacaacaattgaagggtttgatgccgataccacaatcaaagccacgatgttggtatgt 217  Q
    ||||||| |||||||| |   ||||||||||| |||||||||||||||||||||| |||||| | ||||||  |||||||||||| ||  ||||||||    
T  4303928 atcaagacttcatggatgtgatgctttcattgcttgatggaacaacaattgaaggatttgattctgataccgtaatcaaagccacaatactggtatgt 4304025  T

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Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 92 - 220
Target Start/End: Complemental strand, 5805545 - 5805414
Alignment:
Q  92 agaacattgaatgaaaaggttgatcgtga---tcaagatttcatggacgcattgctttcattgtttgatggaacaacaattgaagggtttgatgccgata 188  Q
    ||||| |||| ||||||||||||| ||||   |||||| |||||||| |  || ||||||||| ||||||||||||| |||||||||||||||   ||||    
T  5805545 agaactttgagtgaaaaggttgatggtgaagatcaagacttcatggatgtgttactttcattgcttgatggaacaactattgaagggtttgattgtgata 5805446  T
Q  189 ccacaatcaaagccacgatgttggtatgtata 220  Q
    |||  ||||||||||| || ||||||||||||    
T  5805445 ccatgatcaaagccacaatattggtatgtata 5805414  T

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