View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_72 (Length: 297)
Name: NF19658_low_72
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_72 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 2430433 - 2430735
Alignment:
| Q |
1 |
taagtatttggtcttctatattttgttcacgtgattttggtccattgacaattgacatatgaattatcaagctccaaatctagattcatatgcaaacttg |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2430433 |
taagtatttggtcttttatattttgttcacgtgattttggtccattgacaattgacatatgaattatcaagctccaaatctagattcatatgcaaacttg |
2430532 |
T |
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| Q |
101 |
gatgaaagaccataaatctaaagactgagaggtcacaaggaaataaatcatacatttaaaacttgaatattcatatcaaatggatcaaaagggcaaaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2430533 |
gatgaaagaccataaatctaaagactgagaggtcacaaggaaataaatcatagatttaaaagttgaatattcatatcaaatggatcaaaagggcaaaaat |
2430632 |
T |
|
| Q |
201 |
aatgtg------nnnnnnnnngaagataaaagactaaatcgttccttgaaattaaattaaggtacatatttggcaatttgttagatgaatgtacagacca |
294 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2430633 |
aatgtgaaaaaaaagaagataaaagataaaagactaaatcgttccttgaaattaaattaaggtacatatttggcaatttgttagatgaatgtacagacca |
2430732 |
T |
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| Q |
295 |
tgt |
297 |
Q |
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||| |
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| T |
2430733 |
tgt |
2430735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 2434227 - 2434264
Alignment:
| Q |
217 |
aagataaaagactaaatcgttccttgaaattaaattaa |
254 |
Q |
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| T |
2434227 |
aagataaaaaactaaatcgttacttgaaattaaattaa |
2434264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 176
Target Start/End: Complemental strand, 8358591 - 8358469
Alignment:
| Q |
55 |
acatatgaattatcaagctccaaatcta-gattcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaaggaaataaatcatac |
153 |
Q |
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||||||||||| ||||||| |||||||| ||||||||||||||| | |||||||||| ||| | |||||| | |||||||| ||| ||| ||||||| |
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| T |
8358591 |
acatatgaattttcaagcttcaaatctaagattcatatgcaaacatatatgaaagaccgtaagtttaaagattaagaggtcataagaaaaaaaatcatgg |
8358492 |
T |
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| Q |
154 |
atttaaaacttgaatattcatat |
176 |
Q |
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| T |
8358491 |
aattaaagcttgaaaattcatat |
8358469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 198
Target Start/End: Original strand, 22399105 - 22399247
Alignment:
| Q |
59 |
atgaattatcaagctccaaatcta-gattcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaaggaaataaatc-atacatt |
156 |
Q |
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||||||| ||||||| |||||||| |||||| ||| |||| | | ||||||||||||||| | || ||||||||||||| || || |||| | ||| ||| |
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| T |
22399105 |
atgaattttcaagcttcaaatctaagattcaaatgtaaacataggtgaaagaccataaattttaaaactgagaggtcactagaaattaaaacaatatatt |
22399204 |
T |
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| Q |
157 |
taaaacttgaatattcatat-caaatggatcaaaagggcaaaa |
198 |
Q |
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| T |
22399205 |
tgaagcttgaaaattcatatgcaaatgtaccaaaagagcaaaa |
22399247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 474775 - 474683
Alignment:
| Q |
56 |
catatgaattatcaagctccaaatcta-gattcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaaggaaataaa |
147 |
Q |
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|||||||||| ||||||| ||||| || ||||||||||||||| ||| |||| ||||||| || | |||||||||| ||||| | ||||||| |
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| T |
474775 |
catatgaattttcaagcttcaaatttaagattcatatgcaaacatgggtgaaggaccatagatttgaagactgagaactcacaggaaaataaa |
474683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 176
Target Start/End: Original strand, 9253208 - 9253331
Alignment:
| Q |
56 |
catatgaattatcaagctccaaatcta-gattcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaag--gaaataaatcata |
152 |
Q |
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|||||||||| |||||| |||||||| |||| |||| |||| | |||||||||||||| || | |||| ||||||| || || ||| |||||||| |
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| T |
9253208 |
catatgaattttcaagcatcaaatctaagatttatatcaaaacatagatgaaagaccatatatttgaagattgagaggccatgagaaaaaaaaaatcata |
9253307 |
T |
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| Q |
153 |
catttaaaacttgaatattcatat |
176 |
Q |
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||||||| ||||||||||||||| |
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| T |
9253308 |
gatttaaagcttgaatattcatat |
9253331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 45682541 - 45682600
Alignment:
| Q |
56 |
catatgaattatcaagctccaaatcta-gattcatatgcaaacttggatgaaagaccata |
114 |
Q |
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| T |
45682541 |
catatgaattttcaagctttaaatataagattcatatgcaaacatggatgaaagaccata |
45682600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 147
Target Start/End: Complemental strand, 41317110 - 41317018
Alignment:
| Q |
56 |
catatgaattatcaagctccaaatctaga-ttcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaaggaaataaa |
147 |
Q |
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|||||| ||| ||||||| ||||||| | |||||| |||||| || ||||||||||||| || | |||| || ||||||||||| ||||||| |
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| T |
41317110 |
catatgtattttcaagctttaaatctaaaattcataggcaaacatgaatgaaagaccatagatttgaagattgggaggtcacaagaaaataaa |
41317018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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