View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_74 (Length: 294)
Name: NF19658_low_74
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 278
Target Start/End: Complemental strand, 50441220 - 50440957
Alignment:
| Q |
15 |
acctgtgcatgtattagtagtagtactaatgatcattttacaatttgttatggagaatttaaactttgtcgcttgaggttacaaggtcaaactcttaaaa |
114 |
Q |
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| T |
50441220 |
acctgtgcatgtattagtagtagtactaatgatcattttacaatttgttatggagaatttaaactttgtcccttgaggttacaaggtcaaactcttaaaa |
50441121 |
T |
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| Q |
115 |
ctgagttgacatctcgtagacttaagttagttatattttcccttttcaagggaaatttttaaattcaagatttaattaccattttgataatatagtcttg |
214 |
Q |
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| T |
50441120 |
ctgagttgacatctcgtagacttaagttagttatattttcccttttcaagggaaatttttaaattcaagatttaattaccattttgataatatagtcttg |
50441021 |
T |
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| Q |
215 |
tgctgcaattataggatgacatggaggctgaaatgagaagattaaagttggagctcaagcaaac |
278 |
Q |
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| T |
50441020 |
tgctgcaattataggatgacatggaggctgaaatgagaagattaaagttggagctcaagcaaac |
50440957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 119
Target Start/End: Original strand, 28616314 - 28616346
Alignment:
| Q |
87 |
ttgaggttacaaggtcaaactcttaaaactgag |
119 |
Q |
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| T |
28616314 |
ttgaggttacaaggtcaaattcttaaaactgag |
28616346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 211 - 278
Target Start/End: Original strand, 1272623 - 1272690
Alignment:
| Q |
211 |
cttgtgctgcaattataggatgacatggaggctgaaatgagaagattaaagttggagctcaagcaaac |
278 |
Q |
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| T |
1272623 |
cttgtgctgcaagtataggatgatgtggaggctgaaatgagaagactgaagttggagctaaagcaaac |
1272690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 53028022 - 53028064
Alignment:
| Q |
69 |
gaatttaaactttgtcgcttgaggttacaaggtcaaactctta |
111 |
Q |
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| T |
53028022 |
gaatttgaactttgtcccttgaggttataaggtcaaactctta |
53028064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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