View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_78 (Length: 287)
Name: NF19658_low_78
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_78 |
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| [»] chr5 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 7e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 20 - 287
Target Start/End: Original strand, 41781826 - 41782089
Alignment:
| Q |
20 |
ttatttgagtatgaaatctctctagttctcnnnnnnnttcatatcagttattgatattagttttgaactctaaannnnnnnnnnnnnnnctagcctctta |
119 |
Q |
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| T |
41781826 |
ttatttgagtaagatatctctctagttctcaaaaaaattcatatcatttattgatattagttttgaactctaaattttttgacttttttctagcctctta |
41781925 |
T |
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| Q |
120 |
attgctaaaactaacaatgcaagaggctaatatgaaaataaaaattcgaatacaaagtcatcgcaatgttaatatgttaatttacataaaagtgtgaatg |
219 |
Q |
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| T |
41781926 |
attgttaaaactaacaatgcaagaggctaatatgaaaataaaaattcgaatacaaagtcatcgcaatgttaatatgttaatttacataaaagtgtgaatg |
41782025 |
T |
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| Q |
220 |
tgacatgcatgttgaagttcttcatgagaccatggggaataattatcacattaaactgttgatatggc |
287 |
Q |
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| T |
41782026 |
tga----catgttgaagttcttcatgagaccatgggaaataattgtcacattaaactgttgatatggc |
41782089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 57 - 282
Target Start/End: Complemental strand, 40519787 - 40519560
Alignment:
| Q |
57 |
ttcatatcagttattgatattagttttgaactctaaannnnnnnnnnnnnnnctagcctcttaattgctaaaactaacaatgcaagaggctaatatga-- |
154 |
Q |
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| T |
40519787 |
ttcatatcagttattgatattagttttgagctctaaaaattttaacttttttctagcctcttaattgttaaaactaacaatgca-gaggataatataaca |
40519689 |
T |
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| Q |
155 |
-aaataaaaattcgaatacaaagtcatcgcaatgttaat----atgttaatttacataaaagtgtgaatgtgacatgcatgttgaagttcttcatgagac |
249 |
Q |
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| T |
40519688 |
aaaaaaaaaatcccaatacaaagtcatcacaatgttaattaatatgttaatttacataaaagtgtgaatgtgacatg----ttgaagttgttcatgagac |
40519593 |
T |
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| Q |
250 |
catggggaataattatcacattaaactgttgat |
282 |
Q |
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| T |
40519592 |
catggagaataattgtcacattaaattgttgat |
40519560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 40510685 - 40510645
Alignment:
| Q |
183 |
caatgttaatatgttaatttacataaaagtgtgaatgtgac |
223 |
Q |
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| T |
40510685 |
caatgttaatgtgttaaattacataaaagtgtgaatgtgac |
40510645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 109 - 287
Target Start/End: Complemental strand, 18163764 - 18163591
Alignment:
| Q |
109 |
ctagcctcttaattgctaaaactaacaatgcaagaggctaatatgaaaataaaaattcgaatacaaagtcatcgcaatgttaatatgttaatttacataa |
208 |
Q |
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| T |
18163764 |
ctagcctcttagttgttaaaactaacaatgca-gaggctaatatgaacaaaaaagtcctaaaacaaagtcatcaaaatgttaatatgttaatttacataa |
18163666 |
T |
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| Q |
209 |
aagtgtgaatgtgacatgcatgttgaagttcttcatgagaccatggggaataattatcacattaaactgttgatatggc |
287 |
Q |
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| T |
18163665 |
aagtgtgaatgtga----catgttgaagttgttcatgagaccatgaggaatcattgtcacattaaattgttgatgtggc |
18163591 |
T |
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