View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_80 (Length: 280)
Name: NF19658_low_80
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_80 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 280
Target Start/End: Complemental strand, 7975451 - 7975188
Alignment:
| Q |
16 |
atccacctccaaacacaaattaaagattgtaaattctattagatttattgaaacaaataaattggaaaatgaattgaagaaaactgttcagaaaattgac |
115 |
Q |
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| T |
7975451 |
atccacatccaaacacaaattaaagattgtaaattctat-agatttattgaaacaaataaattggaaaatgaattgaagaaaactgttcagaaaattgac |
7975353 |
T |
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| Q |
116 |
acaagttaattgctgatgggagaaccatcagaaaaatgaaggaaataaaagggtgtggcgttgattcaaaagaactatgataattgaagaaataaaaggc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||| |
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| T |
7975352 |
acaagttaattgctgatgggagaaccatcagaaaaatgaaggaaataaaagggtgtggcgttgagtcaaaagaactatcataattgaaggaataaaaggc |
7975253 |
T |
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| Q |
216 |
tcagaaaaataatgggtatgagaaagttatcagcacatgaaatcagagtggtgcatgactatctc |
280 |
Q |
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| T |
7975252 |
tctgaaaaataatgggtataagaaagttatcagcacaggaaatcaaagtggtgcatgactatctc |
7975188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 13837959 - 13838222
Alignment:
| Q |
16 |
atccacctccaaacacaaattaaagattgtaaattctattagatttattgaaacaaataaattggaaaatgaattgaagaaaactgttcagaaaattgac |
115 |
Q |
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| T |
13837959 |
atccacatccaaacacaaattaaagattgtaaattctat-agattcattgaaacaaataaattggaaaatgaattgaagaaaactgttcagaaaattgac |
13838057 |
T |
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| Q |
116 |
acaagttaattgctgatgggagaaccatcagaaaaatgaaggaaataaaagggtgtggcgttgattcaaaagaactatgataattgaagaaataaaaggc |
215 |
Q |
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| T |
13838058 |
acaagttaattgctgatgggagaaccatcagaaaaatgaaggaaataaaagggtgtggcgttgagtcaaaagaactatgataattgaaggaataaaaggc |
13838157 |
T |
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| Q |
216 |
tcagaaaaataatgggtatgagaaagttatcagcacatgaaatcagagtggtgcatgactatctc |
280 |
Q |
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| T |
13838158 |
tctgaaaaataatgggtataagaaagttatcagcacaggaaatcaaagtggtgcatgactatctc |
13838222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 6927173 - 6927230
Alignment:
| Q |
25 |
caaacacaaattaaagattgtaaattctattagatttattgaaacaaataaattggaa |
82 |
Q |
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|||| |||||||||||||||||||||| ||| |||| ||||||||||||||||||||| |
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| T |
6927173 |
caaaaacaaattaaagattgtaaattcgatttgattcattgaaacaaataaattggaa |
6927230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 26543516 - 26543779
Alignment:
| Q |
16 |
atccacctccaaacacaaattaaagattgtaaattctattagatttattgaaacaaataaattggaaaatgaattgaagaaaactgttcagaaaattgac |
115 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26543516 |
atccacatccaaacacaaattaaagattgtaaattctat-agattcattgaaacaaataaattggaaaatgaattgaagaaaactgttcagaaaattgac |
26543614 |
T |
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| Q |
116 |
acaagttaattgctgatgggagaaccatcagaaaaatgaaggaaataaaagggtgtggcgttgattcaaaagaactatgataattgaagaaataaaaggc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
26543615 |
acaagttaattgctgatgggagaaccatcagaaaaatgaaggaaataaaagggtgtggcgttgagtcaaaagaactatgataattgaaggaataaaaggc |
26543714 |
T |
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| Q |
216 |
tcagaaaaataatgggtatgagaaagttatcagcacatgaaatcagagtggtgcatgactatctc |
280 |
Q |
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|| |||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
26543715 |
tctgaaaaataatgggtataagaaagttatcagcacaggaaatcaaagtggtgcatgactatctc |
26543779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 27 - 280
Target Start/End: Original strand, 43312929 - 43313181
Alignment:
| Q |
27 |
aacacaaattaaagattgtaaattctattagatttattgaaacaaataaattggaaaatgaattgaagaaaactgttcagaaaattgacacaagttaatt |
126 |
Q |
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|||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43312929 |
aacagaaattgaagattgtaaattctat-agattcattgaaacaaataaattggaaaatgaattgaagaaaactgttcaaaaaattgacacaagttaatt |
43313027 |
T |
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| Q |
127 |
gctgatgggagaaccatcagaaaaatgaaggaaataaaagggtgtggcgttgattcaaaagaactatgataattgaagaaataaaaggctcagaaaaata |
226 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||| |||||||| |
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| T |
43313028 |
gctgatggaagaaccatcagaaaaatgaaggaaataaaagggtgtggcgttgagtcaaaagaactatgataattgaaggaataaaagactctgaaaaata |
43313127 |
T |
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| Q |
227 |
atgggtatgagaaagttatcagcacatgaaatcagagtggtgcatgactatctc |
280 |
Q |
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|||||||| ||||||||||||||||| ||||| | ||||||||||||||||||| |
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| T |
43313128 |
atgggtataagaaagttatcagcacaggaaattaaagtggtgcatgactatctc |
43313181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 1293612 - 1293875
Alignment:
| Q |
16 |
atccacctccaaacacaaattaaagattgtaaattctattagatttattgaaacaaataaattggaaaatgaattgaagaaaactgttcagaaaattgac |
115 |
Q |
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|
|||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1293612 |
atccacatccaaacacaaattaaagattgtaaattctat-agattcattgaaacaaataaattggaaaatgaattgaagaaaattgttcagaaaattgac |
1293710 |
T |
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| Q |
116 |
acaagttaattgctgatgggagaaccatcagaaaaatgaaggaaataaaagggtgtggcgttgattcaaaagaactatgataattgaagaaataaaaggc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| | |
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| T |
1293711 |
acaagttaattgctgatgggagaaccatcagaaaaatgaaggaaataaaagggtgtggcgttgagtcaaaagaactatgataattgaaggaataaaagac |
1293810 |
T |
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| Q |
216 |
tcagaaaaataatgggtatgagaaagttatcagcacatgaaatcagagtggtgcatgactatctc |
280 |
Q |
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|| |||||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
1293811 |
tctgaaaaataatgggtataagaaagttatcagcacaggaaatcaaagtggtgcatgactatctc |
1293875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 16422476 - 16422561
Alignment:
| Q |
19 |
cacctccaaacacaaattaaagattgtaaattctattagatttattgaaacaaataaattggaaaatgaattgaagaaaactgttc |
104 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
16422476 |
cacctccaaaaacaaattaaagattgtaaattctattagattcattgaaacaaataaattgaaaaatgaatggaagaaaactgttc |
16422561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 211 - 280
Target Start/End: Original strand, 9901027 - 9901096
Alignment:
| Q |
211 |
aaggctcagaaaaataatgggtatgagaaagttatcagcacatgaaatcagagtggtgcatgactatctc |
280 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
9901027 |
aaggctcagaaaaataatgggtatgagaaaattatcagcacaggaaatcagagtggtgcatgactatctc |
9901096 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 8264129 - 8264061
Alignment:
| Q |
213 |
ggctcagaaaaataatgggtatgagaaagttatcagcacatgaa-atcagagtggtgcatgactatctc |
280 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||| |
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| T |
8264129 |
ggctcagaaaaataatgggtatgagaaaattatcagcactggaatatcagagtggtgcatgactatctc |
8264061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 8277547 - 8277479
Alignment:
| Q |
213 |
ggctcagaaaaataatgggtatgagaaagttatcagcacatgaa-atcagagtggtgcatgactatctc |
280 |
Q |
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|||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||| |
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| T |
8277547 |
ggctcagaaaaataatgggtatgagaaaattatcagcactggaatatcagagtggtgcatgactatctc |
8277479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 33032936 - 33032868
Alignment:
| Q |
213 |
ggctcagaaaaataatgggtatgagaaagttatcagcacatgaa-atcagagtggtgcatgactatctc |
280 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||| |
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| T |
33032936 |
ggctcagaaaaataatgggtatgagaaaattatcagcacggaaacatcagagtggtgcatgactatctc |
33032868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 280
Target Start/End: Complemental strand, 33051178 - 33051110
Alignment:
| Q |
213 |
ggctcagaaaaataatgggtatgagaaagttatcagcacatgaa--atcagagtggtgcatgactatctc |
280 |
Q |
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|||||||||||||| ||||||||||||| ||||||||| |||| || ||||||||||||||||||||| |
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| T |
33051178 |
ggctcagaaaaatattgggtatgagaaaattatcagca-ttgaaacatgagagtggtgcatgactatctc |
33051110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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