View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_82 (Length: 271)
Name: NF19658_low_82
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_82 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 9369587 - 9369349
Alignment:
| Q |
15 |
agaacacaacccatacaaattacaacaaaaaatcaaatttttcaaccattaaagagttcattattcttcccagactttatggtacaaaccttcgctgtta |
114 |
Q |
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| T |
9369587 |
agaacacaacccatacaaattacaacaaaaaatcaaattttccaaccattaaagagttcattattcttcccacactttatggtacaaactttcgctgtta |
9369488 |
T |
|
| Q |
115 |
ggagtgaccctctccgcacctctttgagtttctatcatccaacacgaggatatggaaatggttatgggtttatttggttcatcagtataacttgttttcc |
214 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9369487 |
ggagcgaccctctccgcacctctttgagtttctatcatccaacacgagggtttggaaatggttatggttttatttggttcatcagtataacttgttttcc |
9369388 |
T |
|
| Q |
215 |
ttttatctctatggatctttaacttgtcactgcaccatc |
253 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |
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| T |
9369387 |
ttttatctctatggatcttaaacttgtcactgcaccatc |
9369349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 47817989 - 47818227
Alignment:
| Q |
15 |
agaacacaacccatacaaattacaacaaaaaatcaaatttttcaaccattaaagagttcattattcttcccagactttatggtacaaaccttcgctgtta |
114 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||| || |||||||||||||||| |||||||||| |
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| T |
47817989 |
agaacacaacccatacaaattacaacaaaaaatcaaaattttcaaccattaaagggttcattcttcttctcacactttatggtacaaactttcgctgtta |
47818088 |
T |
|
| Q |
115 |
ggagtgaccctctccgcacctctttgagtttctatcatccaacacgaggatatggaaatggttatgggtttatttggttcatcagtataacttgttttcc |
214 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47818089 |
ggagcgaccctctccgcacctctttgagtttctatcatccaacacgaggatatcgaaatggttatgggtttatttggttcatcagtataacttgttttcc |
47818188 |
T |
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| Q |
215 |
ttttatctctatggatctttaacttgtcactgcaccatc |
253 |
Q |
| |
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||||||||||||||| ||| ||||||||||||||||||| |
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| T |
47818189 |
ttttatctctatggaccttaaacttgtcactgcaccatc |
47818227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 23668725 - 23668487
Alignment:
| Q |
15 |
agaacacaacccatacaaattacaacaaaaaatcaaatttttcaaccattaaagagttcattattcttcccagactttatggtacaaaccttcgctgtta |
114 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| | |||||||||||||| ||||||| || |
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| T |
23668725 |
agaacaaaacccatacaaattacaacaaaaaatcaattttttcaaccattaaagagttcattaatcttcccacattttatggtacaaactttcgctggta |
23668626 |
T |
|
| Q |
115 |
ggagtgaccctctccgcacctctttgagtttctatcatccaacacgaggatatggaaatggttatgggtttatttggttcatcagtataacttgttttcc |
214 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
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| T |
23668625 |
ggagcgaccctctccgcacctctttgagtttctatcatccaacacgaggatatggaaatggttatgggtttatttgattcatcagtataacttgtttttc |
23668526 |
T |
|
| Q |
215 |
ttttatctctatggatctttaacttgtcactgcaccatc |
253 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||| |
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| T |
23668525 |
ttttatctctatggatcttaaacttgtcactgcaccatc |
23668487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 224
Target Start/End: Original strand, 41745267 - 41745353
Alignment:
| Q |
137 |
tttgagtttctatcatccaacacgaggatatggaaatggttatgggtttatttggttcatcagtataacttgttttccttttatctct |
224 |
Q |
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||||||||| ||||||||||||| ||||||| |||||||| | |||||| ||||||||||||||||| | |||||| |||||||| |
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| T |
41745267 |
tttgagtttatatcatccaacacaaggatattatcatggttattgttttatt-ggttcatcagtataactcgctttcctgttatctct |
41745353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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