View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_9 (Length: 620)
Name: NF19658_low_9
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 11 - 548
Target Start/End: Original strand, 36964310 - 36964874
Alignment:
| Q |
11 |
cagagatacaaatggactttcaagattcttaaatggtaatcaacattgtcttgtatatgatgtgaata------tgatcatgtatatgagtattcatgca |
104 |
Q |
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| T |
36964310 |
cagagatacaaatggactttcaagattcttaaatggtaatcaacattgtcttgtatatgatgtgaataataatatgatcatgtatatgagtattcatgca |
36964409 |
T |
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| Q |
105 |
ttaatgatgtgacaactcagaacagcagccactgatcaacact---------gttgtagtcacggtttgccttggggtctcaattttttatattgtagag |
195 |
Q |
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| T |
36964410 |
ttaatgatgtgacaactcagaacagcagccactgatcaacactttcaacactgttgtagtcacggtttgccttggggtcgcaattttttatattgtagag |
36964509 |
T |
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| Q |
196 |
aattacgtt------------aataggctagctttaattctttatattagagaaatgcaaaggaaaaacatgtattgatgaggtctatttttcttttgtt |
283 |
Q |
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| T |
36964510 |
aattacgttcagtgtggcattaataggctagctttaattctttatattagagaaatgcaaaggaaaaacatgtattgatgaggtctatttttcttttgtt |
36964609 |
T |
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| Q |
284 |
ttgctgctaccgattttgggtccaggatcaaccattggccgggtttttatcttcagtgaagtctgtggaggatcattctgttcaagttgaacctgctaaa |
383 |
Q |
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| T |
36964610 |
ttgctgctaccaattttgggtccaggatcaaccattggccgggtttttatcttcagtgaagtctgtggaggatcattctgttcaagttgaacctgctaaa |
36964709 |
T |
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| Q |
384 |
gcagcaactttagatatatt-attgggaagaaagttcgtattaaatggtcagagcttgccgagattactgattatgaccctgccacggtgatatatttaa |
482 |
Q |
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| T |
36964710 |
gcagcaactttagatatattgattgggaagaaacttcgtattaaatggtcagagcttgccgagattactgattatgaccctgcc-cggtgatatatttaa |
36964808 |
T |
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| Q |
483 |
ctcgaaatttatagctgttaaaatcccttttcagattgatatgtctaaatattttcacatgtaaaa |
548 |
Q |
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| T |
36964809 |
ctcgaaatttatagctgttaaaatcccttttcagattgatatgtctaaatattttcacatgtaaaa |
36964874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 567 - 603
Target Start/End: Original strand, 36964894 - 36964930
Alignment:
| Q |
567 |
tttcgtaaaggtataggttacaaaaatgacaaatatg |
603 |
Q |
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| T |
36964894 |
tttcgtaaaggtataggttacaaaaatgacaaatatg |
36964930 |
T |
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