View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_91 (Length: 250)
Name: NF19658_low_91
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_91 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 240
Target Start/End: Complemental strand, 10996314 - 10996086
Alignment:
| Q |
15 |
acaaataattgatctatctactcatatcaacatctattaaaattcatccgaagactataaaagtcttcgaccttgccaaatgctagcagcttccacgata |
114 |
Q |
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| T |
10996314 |
acaaataattgatctatctactcatatcaacatctattaaaattcatccgaagactataaaagtcttcgaccttgccaaatgctagcagcttccacgata |
10996215 |
T |
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| Q |
115 |
ctgccgtgatgtaaaatgtcatatatttttaattttattaca---cggatcacatgcatttaaattgtgagtattaatttctacttgctatgataaaaaa |
211 |
Q |
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| T |
10996214 |
ctgccgtgatgtaaaatgtcatatatttttaattttattacacgccggatcacatgcatttaaattgtgagtattaatttctacttgttatgataaaaaa |
10996115 |
T |
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| Q |
212 |
tttaaaaatgctttccttaacgtcctttg |
240 |
Q |
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| T |
10996114 |
tttaaaaatgctttccttaacgtcctttg |
10996086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 31 - 202
Target Start/End: Complemental strand, 10905898 - 10905727
Alignment:
| Q |
31 |
tctactcatatcaacatctattaaaattcatccgaagactataaaagtcttcgaccttgccaaatgctagcagcttccacgatactgccgtgatgtaaaa |
130 |
Q |
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| T |
10905898 |
tctactcatatcaacatttaataaaattcatccgaagactataaaagtcttcgaccttgccaaaag---gtagcttccacattactgcagtgatgtaaaa |
10905802 |
T |
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| Q |
131 |
tgtcatatatttttaattttattacacggatcacatgcatt---taaattgtgagtattaatttctacttgctat |
202 |
Q |
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| T |
10905801 |
tgtaatatatttttatttttattatacggatctcatgcatttaataaattgtcactatagatttctacttgctat |
10905727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 147 - 240
Target Start/End: Complemental strand, 10988732 - 10988639
Alignment:
| Q |
147 |
ttttattacacggatcacatgcatttaaattgtgagtattaatttctacttgctatgataaaaaatttaaaaatgctttccttaacgtcctttg |
240 |
Q |
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| T |
10988732 |
ttttattatacggatcttatgcatttaaattgtgagtatgaatttctaattgctatgataaaaaattcaaaaatgctttccttaacgtcctttg |
10988639 |
T |
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