View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19658_low_95 (Length: 244)

Name: NF19658_low_95
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19658_low_95
NF19658_low_95
[»] chr3 (4 HSPs)
chr3 (1-93)||(31719514-31719606)
chr3 (132-201)||(31719361-31719430)
chr3 (112-172)||(31012327-31012387)
chr3 (112-172)||(31708941-31709001)
[»] chr5 (1 HSPs)
chr5 (114-170)||(35550736-35550792)


Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 31719606 - 31719514
Alignment:
Q  1 tataatatcaaaataaatctgctgcagcaatgatttatatcaactgtcaggtataagaatgtaatcattttgaatcctattagaattagaatt 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31719606 tataatatcaaaataaatctgctgcagcaatgatttatatcaactgtcaggtataagaatgtaatcattttgaatcctattagaattagaatt 31719514  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 31719430 - 31719361
Alignment:
Q  132 tcaggcgtaaggtggtcttctaaggttattacaaccggatacacatcttatttcttaactgtctgcttga 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31719430 tcaggcgtaaggtggtcttctaaggttattacaaccggatacacatcttatttcttaactctctgcttga 31719361  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 31012327 - 31012387
Alignment:
Q  112 gagccactatggcttgaagatcaggcgtaaggtggtcttctaaggttattacaaccggata 172  Q
    |||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  31012327 gagccactttggcctgaagatcaggagtaaggtggtcttctaaggttattacaaccggata 31012387  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 31709001 - 31708941
Alignment:
Q  112 gagccactatggcttgaagatcaggcgtaaggtggtcttctaaggttattacaaccggata 172  Q
    |||||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  31709001 gagccactttggcctgaagatcaggagtaagatggtcttctaaggttattacaaccggata 31708941  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 114 - 170
Target Start/End: Complemental strand, 35550792 - 35550736
Alignment:
Q  114 gccactatggcttgaagatcaggcgtaaggtggtcttctaaggttattacaaccgga 170  Q
    |||||| ||||||||||||| || ||||| |||||||||| ||||||||||||||||    
T  35550792 gccactttggcttgaagatctggagtaagatggtcttctagggttattacaaccgga 35550736  T

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