View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_98 (Length: 240)
Name: NF19658_low_98
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_98 |
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Alignment Details
Target: chr5 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 48 - 213
Target Start/End: Complemental strand, 1161092 - 1160927
Alignment:
| Q |
48 |
acccaaagacacaacctatagaaaatagttgatgactaaaaccaccaaaacaaacaagcacaacacctcaaaggcttgagctatggctctgaaatccaat |
147 |
Q |
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| T |
1161092 |
acccaaagacataacctatagaaaacaattgatctctagaaccacaaaaacaaacaatcacaacactacagaggcttgagttatggctctgaaatccaat |
1160993 |
T |
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| Q |
148 |
ttcaaaccaccaaaattcaaccccatagcaccccctccaacagcccagcaaaattgccacaaaaga |
213 |
Q |
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| T |
1160992 |
tatgaaccatcaaaattcaaccccttagcaccgcctccaatagaccagcaaagctgccaccaaaga |
1160927 |
T |
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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 6645928 - 6645964
Alignment:
| Q |
18 |
tacaaagatgccgcatataggcgttacatcacccaaa |
54 |
Q |
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| T |
6645928 |
tacaaagatgctgcatataggcgtaacatcacccaaa |
6645964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 21113749 - 21113829
Alignment:
| Q |
145 |
aatttcaaaccaccaaaattcaaccccatagcaccccctccaacagcccagcaaaattgccacaaaagaccccatacctac |
225 |
Q |
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| T |
21113749 |
aatttcaaaccaccaaaattcaaccccatagcaccgcctccaacagcccagcaaagttgccacaaaagaccccagacctac |
21113829 |
T |
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