View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19658_low_99 (Length: 240)
Name: NF19658_low_99
Description: NF19658
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19658_low_99 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 33768216 - 33768015
Alignment:
| Q |
21 |
caaacccggtagaggtttcatccaaggtccttggtccaataaaggaattgttatcagaagaaaatccgccaatctataggaatactactgtgaaagaagt |
120 |
Q |
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| T |
33768216 |
caaactcggtagaggtttcatccaaggtccttggtccaataaaggaattgttatcagaagaaaatccggcaatctatagggatactactgtgaaagaagt |
33768117 |
T |
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| Q |
121 |
gttggcacattattttacaaaaggccttgatgggaactcttccttgcaccctttcaggttgtgaattcagaataagattggagcagtatcaattgttgtg |
220 |
Q |
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| T |
33768116 |
gttggcacattattttacaaaaggccttgatgggaactcttccttgcaccctttcaggttgtgaattcagaataagattggagcagtatcaattgttgtg |
33768017 |
T |
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| Q |
221 |
gt |
222 |
Q |
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|| |
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| T |
33768016 |
gt |
33768015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 32 - 178
Target Start/End: Complemental strand, 33761610 - 33761464
Alignment:
| Q |
32 |
gaggtttcatccaaggtccttggtccaataaaggaattgttatcagaagaaaatccgccaatctataggaatactactgtgaaagaagtgttggcacatt |
131 |
Q |
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| T |
33761610 |
gaggttacatccaaggttgttgctccaataaaggaattgctatcagaagaaaatccaccaatctatagggacactactttgaaagaagtcttggcacatt |
33761511 |
T |
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| Q |
132 |
attttacaaaaggccttgatgggaactcttccttgcaccctttcagg |
178 |
Q |
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| T |
33761510 |
attttacaaaaggccttgatggtaactcttccttgcaccctttcagg |
33761464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 39 - 187
Target Start/End: Complemental strand, 33771005 - 33770857
Alignment:
| Q |
39 |
catccaaggtccttggtccaataaaggaattgttatcagaagaaaatccgccaatctataggaatactactgtgaaagaagtgttggcacattattttac |
138 |
Q |
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| T |
33771005 |
catccaaggttgttggtccaataaatgaattgttatcagaagaaaatccaccaatctatagggacactactgtgaatgatttcttggcacattattatga |
33770906 |
T |
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| Q |
139 |
aaaaggccttgatgggaactcttccttgcaccctttcaggttgtgaatt |
187 |
Q |
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| T |
33770905 |
aaaatctcttgatgggagctcttccttgcagcctttcagagtgtgaatt |
33770857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 49463192 - 49463125
Alignment:
| Q |
122 |
ttggcacattattttacaaaaggccttgatgggaactcttccttgcaccctttcaggttgtgaattca |
189 |
Q |
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| T |
49463192 |
ttggcacattattatgcaaaaggccttgatgggaactcttccttgcagcccttcaagttgtgaattca |
49463125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 41242344 - 41242410
Alignment:
| Q |
52 |
tggtccaataaaggaattgttatcagaagaaaatccgccaatctataggaatactactgtgaaagaa |
118 |
Q |
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| T |
41242344 |
tggtccaataaaggaattgttatcagaagaaaaccctccaatctatagagatattactatgaaagaa |
41242410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 118
Target Start/End: Original strand, 28130725 - 28130791
Alignment:
| Q |
52 |
tggtccaataaaggaattgttatcagaagaaaatccgccaatctataggaatactactgtgaaagaa |
118 |
Q |
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| T |
28130725 |
tggtccaataaaggaattgttatcagaagaaaaccctccaatctatagagatattactatgaaagaa |
28130791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 19892129 - 19892189
Alignment:
| Q |
129 |
attattttacaaaaggccttgatgggaactcttccttgcaccctttcaggttgtgaattca |
189 |
Q |
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|||||| | |||||||||| ||||| |||||||||||| | || |||| |||||||||||| |
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| T |
19892129 |
attattatgcaaaaggcctagatggaaactcttccttggagcccttcaagttgtgaattca |
19892189 |
T |
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