View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19659_high_11 (Length: 253)

Name: NF19659_high_11
Description: NF19659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19659_high_11
NF19659_high_11
[»] chr4 (1 HSPs)
chr4 (3-236)||(39131980-39132213)
[»] chr7 (7 HSPs)
chr7 (3-236)||(18658685-18658918)
chr7 (9-236)||(21130523-21130750)
chr7 (11-236)||(21111563-21111788)
chr7 (132-236)||(21123395-21123499)
chr7 (39-184)||(21098492-21098637)
chr7 (39-184)||(21108111-21108256)
chr7 (75-123)||(29213204-29213252)
[»] chr3 (12 HSPs)
chr3 (51-161)||(26751165-26751275)
chr3 (51-187)||(26713967-26714103)
chr3 (51-193)||(26737197-26737339)
chr3 (51-161)||(26744240-26744350)
chr3 (30-123)||(47212442-47212535)
chr3 (51-193)||(26698809-26698951)
chr3 (51-193)||(26733972-26734114)
chr3 (54-123)||(26690345-26690414)
chr3 (54-123)||(26731656-26731725)
chr3 (54-123)||(26694506-26694575)
chr3 (27-157)||(47193355-47193485)
chr3 (102-157)||(9792530-9792585)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 3 - 236
Target Start/End: Original strand, 39131980 - 39132213
Alignment:
Q  3 agacaagcagcaataaagagattgaatgaagctaatcaaggggaaggagagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttga 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |    
T  39131980 agacaagcagcaataaagagattgaatgaagctaatcaaggggaaggagagtttcttgctgaagtaagcatcatcggaaggctcaatcacatgaacttaa 39132079  T
Q  103 ttgaaatgtggggatattgtgttgaaggtaagcatagaattttggtatatgagtacatgaagaatgactctttagctgaaaatctttcatctaaaactaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39132080 ttgaaatgtggggatattgtgttgaaggtaagcatagaattttggtatatgagtacatgaagaatgactctttagctgaaaatctttcatctaaaactaa 39132179  T
Q  203 catgcttgattggagtaaaaggtatgatattgct 236  Q
    ||||||||||||||||||||||||||||||||||    
T  39132180 catgcttgattggagtaaaaggtatgatattgct 39132213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 18658918 - 18658685
Alignment:
Q  3 agacaagcagcaataaagagattgaatgaagctaatcaaggggaaggagagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttga 102  Q
    ||||| ||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18658918 agacatgcagcaataaagagattaaatgaagctaaacaaggagaaggagaatttcttgctgaagtaagcatcattggacggcttaaccacatgaacttga 18658819  T
Q  103 ttgaaatgtggggatattgtgttgaaggtaagcatagaattttggtatatgagtacatgaagaatgactctttagctgaaaatctttcatctaaaactaa 202  Q
    |||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||| | ||||  ||||||||||||||||||||||||||||||||    
T  18658818 ttgatatgtggggatattgtgctgaaggtaagcatagacttttggtatatgagtacatggaaaatggatctttagctgaaaatctttcatctaaaactaa 18658719  T
Q  203 catgcttgattggagtaaaaggtatgatattgct 236  Q
    ||  ||||| ||||||||||||||||||||||||    
T  18658718 cacacttgactggagtaaaaggtatgatattgct 18658685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 21130750 - 21130523
Alignment:
Q  9 gcagcaataaagagattgaatgaagctaatcaaggggaaggagagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaa 108  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||    
T  21130750 gcagcaataaagagattgaatgaagctaaacaaggagaaggagagtttcttgctgaagtaagcatcattgaaaagcttaaccacatgaatttgattgaaa 21130651  T
Q  109 tgtggggatattgtgttgaaggtaagcatagaattttggtatatgagtacatgaagaatgactctttagctgaaaatctttcatctaaaactaacatgct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||  |||||||| |||||||||||||| ||||| ||||  ||    
T  21130650 tgtggggatattgtgttgaaggtaagcatagaattttggtatatgagtacatggaaaatggttctttagcggaaaatctttcatccaaaaccaacacact 21130551  T
Q  209 tgattggagtaaaaggtatgatattgct 236  Q
    |||||||| |||||||||||||||||||    
T  21130550 tgattggactaaaaggtatgatattgct 21130523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 11 - 236
Target Start/End: Complemental strand, 21111788 - 21111563
Alignment:
Q  11 agcaataaagagattgaatgaagctaatcaaggggaaggagagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatg 110  Q
    ||||||||||||||| ||||||||||| ||||| |||||||| |||||||| |||||||| ||||||||| |||||||||||||||||||||| ||||||    
T  21111788 agcaataaagagattaaatgaagctaaacaaggagaaggagaatttcttgccgaagtaagtatcattggacggcttaaccacatgaacttgatagaaatg 21111689  T
Q  111 tggggatattgtgttgaaggtaagcatagaattttggtatatgagtacatgaagaatgactctttagctgaaaatctttcatctaaaactaacatgcttg 210  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||| | ||||  ||||||||||||||||||||||||||||||||||  ||||    
T  21111688 tggggatattgtgctgaaggtaagcatagacttttggtatatgagtacatggaaaatggatctttagctgaaaatctttcatctaaaactaacacacttg 21111589  T
Q  211 attggagtaaaaggtatgatattgct 236  Q
    ||||||||||||||||||||||||||    
T  21111588 attggagtaaaaggtatgatattgct 21111563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 21123499 - 21123395
Alignment:
Q  132 aagcatagaattttggtatatgagtacatgaagaatgactctttagctgaaaatctttcatctaaaactaacatgcttgattggagtaaaaggtatgata 231  Q
    |||||||||||||||||||||||||||||| | ||||  ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  21123499 aagcatagaattttggtatatgagtacatggaaaatggatctttagctgaaaatctttcatctaaaactaacacacttgattggagtaaaaggtatgata 21123400  T
Q  232 ttgct 236  Q
    |||||    
T  21123399 ttgct 21123395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 184
Target Start/End: Original strand, 21098492 - 21098637
Alignment:
Q  39 caaggggaaggagagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtgttgaaggtaagcata 138  Q
    ||||| ||||| || ||||| ||||||||| | ||||||||||||||||| |||||||| ||||| ||||||||||||||||| | ||| || ||  |||    
T  21098492 caaggtgaaggtgaatttctagctgaagtaggaatcattggaaggcttaatcacatgaatttgatcgaaatgtggggatattgcgctgagggaaaatata 21098591  T
Q  139 gaattttggtatatgagtacatgaagaatgactctttagctgaaaa 184  Q
    || | ||||| || ||||||||| | ||||  |||||||| |||||    
T  21098592 gactattggtttacgagtacatggaaaatggttctttagccgaaaa 21098637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 184
Target Start/End: Original strand, 21108111 - 21108256
Alignment:
Q  39 caaggggaaggagagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtgttgaaggtaagcata 138  Q
    ||||| ||||| || ||||| ||||||||| | ||||||||||||||||| |||||||| ||||| ||||||||||||||||| | ||| || ||  |||    
T  21108111 caaggagaaggtgaatttctagctgaagtaggaatcattggaaggcttaatcacatgaatttgatcgaaatgtggggatattgcgctgagggaaaatata 21108210  T
Q  139 gaattttggtatatgagtacatgaagaatgactctttagctgaaaa 184  Q
    || | ||||| || ||||||||| | ||||  |||||||| |||||    
T  21108211 gactattggtttacgagtacatggaaaatggttctttagccgaaaa 21108256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 29213252 - 29213204
Alignment:
Q  75 attggaaggcttaaccacatgaacttgattgaaatgtggggatattgtg 123  Q
    ||||||| ||||||||||||||| ||||||||| ||||||| |||||||    
T  29213252 attggaaagcttaaccacatgaatttgattgaattgtggggttattgtg 29213204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 26751275 - 26751165
Alignment:
Q  51 gagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtgttgaaggtaagcatagaattttggtat 150  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||  |||||||| ||||||| ||| || ||||||||| | ||||| |    
T  26751275 gagtttcttgccgaagttagcatcattggaaggcttaaccacatgaatttgattggtatgtggggttattgtgctgagggaaagcatagattgttggttt 26751176  T
Q  151 atgagtacatg 161  Q
    |||||||||||    
T  26751175 atgagtacatg 26751165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 187
Target Start/End: Complemental strand, 26714103 - 26713967
Alignment:
Q  51 gagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtgttgaaggtaagcatagaattttggtat 150  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||| ||| || || |||| | | ||||| |    
T  26714103 gagtttcttgcagaagttagcatcattggaaggcttaaccacatgaatttgattggaatgtggggttattgtgctgagggaaaacataaattgttggttt 26714004  T
Q  151 atgagtacatgaagaatgactctttagctgaaaatct 187  Q
    ||||||||||| | ||||   |||||||||| |||||    
T  26714003 atgagtacatggaaaatggtactttagctgataatct 26713967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 193
Target Start/End: Complemental strand, 26737339 - 26737197
Alignment:
Q  51 gagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtgttgaaggtaagcatagaattttggtat 150  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||| || |||| ||||||||| ||||||| ||| || || |||| | | ||||| |    
T  26737339 gagtttcttgcagaagttagcatcattggaaggcttaaccacatgaatttaattggaatgtggggttattgtgctgagggaaaacataaattgttggttt 26737240  T
Q  151 atgagtacatgaagaatgactctttagctgaaaatctttcatc 193  Q
    ||||||||||| | ||||   |||||||||| ||||| |||||    
T  26737239 atgagtacatggaaaatggtactttagctgataatctctcatc 26737197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 51 - 161
Target Start/End: Complemental strand, 26744350 - 26744240
Alignment:
Q  51 gagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtgttgaaggtaagcatagaattttggtat 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||| ||||||| ||| || || |||||| | ||||| |    
T  26744350 gagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttaattggtatgtggggctattgtgctgagggaaaacatagattgttggttt 26744251  T
Q  151 atgagtacatg 161  Q
    | |||| ||||    
T  26744250 acgagtgcatg 26744240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 47212535 - 47212442
Alignment:
Q  30 gaagctaatcaaggggaaggagagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtg 123  Q
    ||||| |||||||| |||| ||||||||| || |||||||||| |||||||| ||||||||||||||| ||||||||||||||||| |||||||    
T  47212535 gaagcaaatcaaggcgaagaagagtttctcgcagaagtaagcagcattggaaagcttaaccacatgaatttgattgaaatgtggggttattgtg 47212442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 193
Target Start/End: Complemental strand, 26698951 - 26698809
Alignment:
Q  51 gagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtgttgaaggtaagcatagaattttggtat 150  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||| ||||| | ||||||||| |||||||  || || || || ||| | ||||| |    
T  26698951 gagtttcttgctgaagttagcatcattggaaggcttaatcacatgaatttgataggaatgtggggttattgtgccgagggaaaacacagattgttggttt 26698852  T
Q  151 atgagtacatgaagaatgactctttagctgaaaatctttcatc 193  Q
    ||||||||||| | ||||   |||||||||| ||||| |||||    
T  26698851 atgagtacatggaaaatggtactttagctgataatctctcatc 26698809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 51 - 193
Target Start/End: Complemental strand, 26734114 - 26733972
Alignment:
Q  51 gagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtgttgaaggtaagcatagaattttggtat 150  Q
    |||||||||| |||||| |||||||||||||||||||| |||||||| ||||| | ||||||||| |||||||  || || || || ||| | ||||| |    
T  26734114 gagtttcttgttgaagttagcatcattggaaggcttaatcacatgaatttgataggaatgtggggttattgtgccgagggaaaacacagattgttggttt 26734015  T
Q  151 atgagtacatgaagaatgactctttagctgaaaatctttcatc 193  Q
    ||||||||||| | ||||   |||||||||| ||||| |||||    
T  26734014 atgagtacatggaaaatggtactttagctgataatctctcatc 26733972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 26690345 - 26690414
Alignment:
Q  54 tttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtg 123  Q
    |||||||||||||| ||| ||||||||||||||||||||||||| |||||||  |||||||| |||||||    
T  26690345 tttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtg 26690414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 26731656 - 26731725
Alignment:
Q  54 tttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtg 123  Q
    |||||||||||||| ||| ||||||||||||||||||||||||| |||||||  |||||||| |||||||    
T  26731656 tttcttgctgaagttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtg 26731725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 26694506 - 26694575
Alignment:
Q  54 tttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtg 123  Q
    |||||||||||| | ||| ||||||||||||||||||||||||| |||||||  |||||||| |||||||    
T  26694506 tttcttgctgaacttagcgtcattggaaggcttaaccacatgaatttgattggtatgtgggggtattgtg 26694575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 157
Target Start/End: Original strand, 47193355 - 47193485
Alignment:
Q  27 aatgaagctaatcaaggggaaggagagtttcttgctgaagtaagcatcattggaaggcttaaccacatgaacttgattgaaatgtggggatattgtgttg 126  Q
    ||||||||| |||| || ||||  || ||||| |||||| ||||||  ||||| | | | ||||| ||||| || ||||| |||||||||||||||||||    
T  47193355 aatgaagctcatcagggagaagctgaatttctagctgaaataagcacaattggtatgttgaaccatatgaatttaattgatatgtggggatattgtgttg 47193454  T
Q  127 aaggtaagcatagaattttggtatatgagta 157  Q
    |||| || |||||  ||||||| ||||||||    
T  47193455 aagggaaacataggcttttggtctatgagta 47193485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 9792530 - 9792585
Alignment:
Q  102 attgaaatgtggggatattgtgttgaaggtaagcatagaattttggtatatgagta 157  Q
    ||||| ||||||||||||||||||||||| ||  ||||| ||||||| ||||||||    
T  9792530 attgatatgtggggatattgtgttgaagggaaaaatagacttttggtttatgagta 9792585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University