View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19659_high_4 (Length: 358)

Name: NF19659_high_4
Description: NF19659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19659_high_4
NF19659_high_4
[»] chr1 (3 HSPs)
chr1 (12-342)||(17311426-17311756)
chr1 (61-158)||(13933094-13933191)
chr1 (61-142)||(14005480-14005561)
[»] chr5 (1 HSPs)
chr5 (18-164)||(16446478-16446624)
[»] chr3 (15 HSPs)
chr3 (18-164)||(5965506-5965652)
chr3 (18-160)||(11497858-11498000)
chr3 (59-164)||(5051613-5051718)
chr3 (15-162)||(2919209-2919347)
chr3 (283-342)||(5051846-5051905)
chr3 (78-135)||(3913777-3913834)
chr3 (61-162)||(4060831-4060932)
chr3 (61-112)||(7492603-7492654)
chr3 (61-142)||(3885135-3885216)
chr3 (61-158)||(4080443-4080540)
chr3 (61-158)||(4092569-4092666)
chr3 (87-134)||(912013-912060)
chr3 (283-340)||(2919474-2919531)
chr3 (61-158)||(4115313-4115410)
chr3 (221-281)||(11491333-11491393)
[»] chr8 (2 HSPs)
chr8 (15-156)||(18387639-18387780)
chr8 (223-266)||(18387823-18387866)
[»] chr4 (2 HSPs)
chr4 (64-130)||(5988190-5988256)
chr4 (221-259)||(5988323-5988361)
[»] scaffold1301 (1 HSPs)
scaffold1301 (52-112)||(7-67)
[»] scaffold0267 (1 HSPs)
scaffold0267 (61-157)||(18364-18460)
[»] scaffold0603 (1 HSPs)
scaffold0603 (19-112)||(5137-5230)


Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 12 - 342
Target Start/End: Original strand, 17311426 - 17311756
Alignment:
Q  12 atgaacaaacttaaacatcttttgttgtttagtgattttgatgatagtcaaataagagttatttccattgtgggtatgggagggattggtaaaacagccc 111  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17311426 atgaacaaacttaaccatcttttgttgtttagtgattttgatgatagtcaaataagagttatttccattgtgggtatgggagggattggtaaaacagccc 17311525  T
Q  112 tagccaaactactttacaatgatcctgaagttatggagaaatttgagttaaaaaggtttatctcaaaacatcatgatgatttcagggttttctgtaaaca 211  Q
    | ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17311526 ttgccaaactactttacaatgatcgcgaagttatggagaaatttgagttaaaaaggtttatctcaaaacatcatgatgatttcagggttttctctaaaca 17311625  T
Q  212 ttatgatgatttcagggttttggaaaccattcttgaatctgttacttctcaaacagtcaatagtgataacttgaataccgtttatccaaattttttgtta 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17311626 ttatgatgatttcagggttttggaaaccattcttgaatctgttacttctcaaacagtcaatagtgataacttgaataccgtttatccaaattttttgtta 17311725  T
Q  312 gtattggatgatgttttggatgcaagatctg 342  Q
    |||||||||||||||||||||||||||||||    
T  17311726 gtattggatgatgttttggatgcaagatctg 17311756  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 158
Target Start/End: Original strand, 13933094 - 13933191
Alignment:
Q  61 aaataagagttatttccattgtgggtatgggagggattggtaaaacagccctagccaaactactttacaatgatcctgaagttatggagaaatttgag 158  Q
    ||||| |||| |||||||||||||| ||||||||| | || |||||| | ||||| ||||| || ||||| || | |||||| | |||||||||||||    
T  13933094 aaataggagtgatttccattgtggggatgggagggctaggaaaaacaacactagctaaactcctctacaacgaccgtgaagtgaaggagaaatttgag 13933191  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 14005561 - 14005480
Alignment:
Q  61 aaataagagttatttccattgtgggtatgggagggattggtaaaacagccctagccaaactactttacaatgatcctgaagt 142  Q
    ||||| |||| ||||||||||| || ||||||||| |||| |||||| | ||||| ||||| |||| |||||||| ||||||    
T  14005561 aaataggagtgatttccattgtaggcatgggagggcttggaaaaacaacactagctaaactccttttcaatgatcatgaagt 14005480  T

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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 16446478 - 16446624
Alignment:
Q  18 aaacttaaacatcttttgttgtttagtgattttgatgatagtcaaataagagttatttccattgtgggtatgggagggattggtaaaacagccctagcca 117  Q
    ||||||||||||||||| || | || || ||||||| ||||| || || || |||||||||||||||||||||||||||||||||||||| |||| || |    
T  16446478 aaacttaaacatcttttattatctactggttttgataatagtaaagtaggaattatttccattgtgggtatgggagggattggtaaaacatcccttgcta 16446577  T
Q  118 aactactttacaatgatcctgaagttatggagaaatttgagttaaaa 164  Q
    |||| |||||| ||||||| ||||| |  || |||||||||||||||    
T  16446578 aactgctttactatgatcccgaagtaagagaaaaatttgagttaaaa 16446624  T

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Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 5965506 - 5965652
Alignment:
Q  18 aaacttaaacatcttttgttgtttagtgattttgatgatagtcaaataagagttatttccattgtgggtatgggagggattggtaaaacagccctagcca 117  Q
    |||||||||||||||||||||| ||||||   ||||||| || ||||| || ||||||||||||||||||| | |||||||||||||||| |||| || |    
T  5965506 aaacttaaacatcttttgttgtctagtgacggtgatgatggtaaaataggaattatttccattgtgggtattgaagggattggtaaaacaacccttgcta 5965605  T
Q  118 aactactttacaatgatcctgaagttatggagaaatttgagttaaaa 164  Q
    |  | |||||||||||||| || |||| ||| |||||||||||||||    
T  5965606 aggttctttacaatgatcccgatgttaaggataaatttgagttaaaa 5965652  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 11498000 - 11497858
Alignment:
Q  18 aaacttaaacatcttttgttgtttagtgattttgatgatagtcaaataagagttatttccattgtgggtatgggagggattggtaaaacagccctagcca 117  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||| || ||||||| || |||||||| | |||||||||||||||  || | ||      
T  11498000 aaacttaaacatcttttgttgtctagtgattgtgatgatagtcaaatacgaattatttcaatcgtgggtattgaagggattggtaaaactacctttgcag 11497901  T
Q  118 aactactttacaatgatcctgaagttatggagaaatttgagtt 160  Q
    |||| ||||| || ||||||||||| |  || |||||||||||    
T  11497900 aactcctttataacgatcctgaagtaaatgacaaatttgagtt 11497858  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 59 - 164
Target Start/End: Original strand, 5051613 - 5051718
Alignment:
Q  59 tcaaataagagttatttccattgtgggtatgggagggattggtaaaacagccctagccaaactactttacaatgatcctgaagttatggagaaatttgag 158  Q
    |||||||||| |||||||||| ||||| |||| ||||||||||||||||||||| || ||||| |||||||| |||||| | || | ||| |||||||||    
T  5051613 tcaaataagaattatttccatcgtgggaatggtagggattggtaaaacagcccttgctaaactcctttacaacgatcctcatgtaaaggacaaatttgag 5051712  T
Q  159 ttaaaa 164  Q
    ||||||    
T  5051713 ttaaaa 5051718  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 2919209 - 2919347
Alignment:
Q  15 aacaaacttaaacatcttttgttgtttagtgattttgatgatagtcaaataagagttatttccattgtgggtatgggagggattggtaaaacagccctag 114  Q
    ||||||||||||||||||||||||| |||||||         ||| |||||||| ||||||| |||| |||||||| |||||||||||||||| || | |    
T  2919209 aacaaacttaaacatcttttgttgtctagtgat---------agtgaaataagaattatttcgattgcgggtatggcagggattggtaaaacaaccgttg 2919299  T
Q  115 ccaaactactttacaatgatcctgaagttatggagaaatttgagttaa 162  Q
    | |||||  ||||||||||| |  |||| | ||| |||||||||||||    
T  2919300 ctaaactcatttacaatgattcccaagtaagggacaaatttgagttaa 2919347  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 5051846 - 5051905
Alignment:
Q  283 tgaataccgtttatccaaattttttgttagtattggatgatgttttggatgcaagatctg 342  Q
    |||||| ||| || ||||||||||| |||||||||||||| |||||||||||||||||||    
T  5051846 tgaatatcgtgtacccaaattttttattagtattggatgacgttttggatgcaagatctg 5051905  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 3913834 - 3913777
Alignment:
Q  78 attgtgggtatgggagggattggtaaaacagccctagccaaactactttacaatgatc 135  Q
    ||||| ||||||||||||||||| |||||| | ||||| |||||||||||||||||||    
T  3913834 attgttggtatgggagggattggaaaaacaacactagctaaactactttacaatgatc 3913777  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 162
Target Start/End: Complemental strand, 4060932 - 4060831
Alignment:
Q  61 aaataagagttatttccattgtgggtatgggagggattggtaaaacagccctagccaaactactttacaatgatcctgaagttatggagaaatttgagtt 160  Q
    ||||| |||| |||||||||||||| ||||||||| | || |||||| | || || ||||| ||||||||||| | |||||| | |||||||||||| ||    
T  4060932 aaataggagtgatttccattgtggggatgggagggctaggaaaaacaacacttgctaaactcctttacaatgaccatgaagtgaaggagaaatttgattt 4060833  T
Q  161 aa 162  Q
    ||    
T  4060832 aa 4060831  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 7492654 - 7492603
Alignment:
Q  61 aaataagagttatttccattgtgggtatgggagggattggtaaaacagccct 112  Q
    |||||||| | || |||||||| |||||||||||||||||||||||||||||    
T  7492654 aaataagaatgatctccattgttggtatgggagggattggtaaaacagccct 7492603  T

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Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 142
Target Start/End: Original strand, 3885135 - 3885216
Alignment:
Q  61 aaataagagttatttccattgtgggtatgggagggattggtaaaacagccctagccaaactactttacaatgatcctgaagt 142  Q
    ||||| |||| ||||||||||| || ||||||||| |||| |||||| | ||||| ||||| |||| |||||||| ||||||    
T  3885135 aaataggagtgatttccattgtaggcatgggagggcttggaaaaacaacactagctaaactccttttcaatgatcatgaagt 3885216  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 158
Target Start/End: Complemental strand, 4080540 - 4080443
Alignment:
Q  61 aaataagagttatttccattgtgggtatgggagggattggtaaaacagccctagccaaactactttacaatgatcctgaagttatggagaaatttgag 158  Q
    ||||| |||| |||||||||||||| ||||||||| | || |||||| | ||||| ||||| || ||||| || | |||||| | |||||||||||||    
T  4080540 aaataggagtgatttccattgtggggatgggagggctaggaaaaacaacactagctaaactcctctacaacgaccgtgaagtgaaggagaaatttgag 4080443  T

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Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 158
Target Start/End: Complemental strand, 4092666 - 4092569
Alignment:
Q  61 aaataagagttatttccattgtgggtatgggagggattggtaaaacagccctagccaaactactttacaatgatcctgaagttatggagaaatttgag 158  Q
    ||||| |||| |||||||||||||| ||||||||| | || |||||| | ||||| ||||| ||||||||||| | ||| || | | |||||||||||    
T  4092666 aaataggagtgatttccattgtggggatgggagggctaggaaaaacaacgctagctaaactcctttacaatgaccatgatgtgaagcagaaatttgag 4092569  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 134
Target Start/End: Complemental strand, 912060 - 912013
Alignment:
Q  87 atgggagggattggtaaaacagccctagccaaactactttacaatgat 134  Q
    ||||||||||||||||||||| |||| || ||| ||||||||||||||    
T  912060 atgggagggattggtaaaacaacccttgcaaaattactttacaatgat 912013  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 340
Target Start/End: Original strand, 2919474 - 2919531
Alignment:
Q  283 tgaataccgtttatccaaattttttgttagtattggatgatgttttggatgcaagatc 340  Q
    |||||||| | || |||||||||||| ||||||||||||| || | ||||||||||||    
T  2919474 tgaataccatgtacccaaattttttgctagtattggatgacgtgtgggatgcaagatc 2919531  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 158
Target Start/End: Complemental strand, 4115410 - 4115313
Alignment:
Q  61 aaataagagttatttccattgtgggtatgggagggattggtaaaacagccctagccaaactactttacaatgatcctgaagttatggagaaatttgag 158  Q
    ||||| |||| |||||||||||||| ||||||||| | || |||||| | ||||| ||| | ||||||||||| | ||| || | | |||||||||||    
T  4115410 aaataggagtgatttccattgtggggatgggagggctaggaaaaacaacactagctaaaatcctttacaatgaccatgatgtgaagcagaaatttgag 4115313  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 11491393 - 11491333
Alignment:
Q  221 tttcagggttttggaaaccattcttgaatctgttacttctcaaacagtcaatagtgataac 281  Q
    |||||||||||  ||||||||||| |||||| ||||||| |||||| ||| || |||||||    
T  11491393 tttcagggtttatgaaaccattctagaatctattacttcacaaacaatcagtaatgataac 11491333  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 156
Target Start/End: Original strand, 18387639 - 18387780
Alignment:
Q  15 aacaaacttaaacatcttttgttgtttagtgattttgatgatagtcaaataagagttatttccattgtgggtatgggagggattggtaaaacagccctag 114  Q
    |||||||||||||||||||| |||| || |||   |||||||||| ||| ||||  |||||||||||||||||||| ||||||||||||||||||||| |    
T  18387639 aacaaacttaaacatcttttattgtataatgacagtgatgatagtaaaacaagaactatttccattgtgggtatggcagggattggtaaaacagcccttg 18387738  T
Q  115 ccaaactactttacaatgatcctgaagttatggagaaatttg 156  Q
    | ||  | |||||||||||||| || |||| ||| |||||||    
T  18387739 caaatttcctttacaatgatccagatgttaaggacaaatttg 18387780  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 266
Target Start/End: Original strand, 18387823 - 18387866
Alignment:
Q  223 tcagggttttggaaaccattcttgaatctgttacttctcaaaca 266  Q
    ||||||||||||||||||||||||||||| | ||||| ||||||    
T  18387823 tcagggttttggaaaccattcttgaatctatcacttcacaaaca 18387866  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 130
Target Start/End: Original strand, 5988190 - 5988256
Alignment:
Q  64 taagagttatttccattgtgggtatgggagggattggtaaaacagccctagccaaactactttacaa 130  Q
    ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||    
T  5988190 taagaattatttccattgtgggtatgggaggggttggtaaaacaaccctagccaaactcctttacaa 5988256  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 259
Target Start/End: Original strand, 5988323 - 5988361
Alignment:
Q  221 tttcagggttttggaaaccattcttgaatctgttacttc 259  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  5988323 tttcagggttttggaaactattcttgaatctattacttc 5988361  T

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Target: scaffold1301 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 67 - 7
Alignment:
Q  52 atgatagtcaaataagagttatttccattgtgggtatgggagggattggtaaaacagccct 112  Q
    |||||||| ||||||||||||||| |||||| ||||||| ||||||||||||| |||||||    
T  67 atgatagtaaaataagagttattttcattgtcggtatggcagggattggtaaatcagccct 7  T

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Target: scaffold0267 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 157
Target Start/End: Original strand, 18364 - 18460
Alignment:
Q  61 aaataagagttatttccattgtgggtatgggagggattggtaaaacagccctagccaaactactttacaatgatcctgaagttatggagaaatttga 157  Q
    ||||| |||| |||||||||||||| ||||||||  | ||||||||| | || || ||||| |||||||| ||||| ||||| | ||||||||||||    
T  18364 aaataggagtgatttccattgtgggaatgggaggcttgggtaaaacaactcttgctaaacttctttacaacgatccggaagtaaaggagaaatttga 18460  T

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Target: scaffold0603 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 5230 - 5137
Alignment:
Q  19 aacttaaacatcttttgttgtttagtgattttgatgatagtcaaataagagttatttccattgtgggtatgggagggattggtaaaacagccct 112  Q
    |||||||||||||||| |||| |   |||  |||||||||| ||||| || | ||||||||||| ||||| | |||||| ||||||||| ||||    
T  5230 aacttaaacatcttttattgtctgaagatggtgatgatagtaaaatacgaatcatttccattgttggtatagcagggatcggtaaaacaaccct 5137  T

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