View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19659_low_10 (Length: 254)
Name: NF19659_low_10
Description: NF19659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19659_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 8746891 - 8747118
Alignment:
| Q |
11 |
cgtcaacattacactttacgaagtttttgggtggtcgttgccatttcaccctatctagatgagtttgttgccgtgacgagggcagctcctcaatttgacg |
110 |
Q |
| |
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||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
8746891 |
cgtcaacattacactttacgaagttattggatggtcattgccatttcaccctatctggatgagtttgttgtcgtgacgagggcagctcctcaatttgacg |
8746990 |
T |
|
| Q |
111 |
tgcattccaccatcctgtccacatgtaactccctgtatgaaaaatttctgccatatcccctcattttgatggtcccaaattgatacatttctactcttcc |
210 |
Q |
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||||||||||||| ||||| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8746991 |
tgcattccaccattctgtcaacttgtaactccctgtatgataaatttctgcc--atcccctcattttgatggtcccaaattgatacatttctactcttcc |
8747088 |
T |
|
| Q |
211 |
acaagctccaaatattcataacaaaaatac |
240 |
Q |
| |
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|||||||||||||||||||| ||||||||| |
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| T |
8747089 |
acaagctccaaatattcatagcaaaaatac |
8747118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 6955426 - 6955651
Alignment:
| Q |
12 |
gtcaacattacactttacgaagtttttgggtggtcgttgccatttcaccctatctagatgagtttgttgccgtgacgagggcagctcctcaatttgacgt |
111 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
6955426 |
gtcaacattacactttacgaagctattgggtggtcgttgccatttcaccctatcaggatgagtttgttgtcgtgacgacggcagctcctcaatttgacgt |
6955525 |
T |
|
| Q |
112 |
gcattccaccatcctgtccacatgtaactccctgtatgaaaaatttctgccatatcccctcattttgatggtcccaaattgatacatttctactcttcca |
211 |
Q |
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||||||| |||| ||||| |||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6955526 |
gcattccgccattctgtcaacatgtaactccctctatgaataatttctgcc--atcccctcattttgatggtcccaaattgatacatttctcctcttcca |
6955623 |
T |
|
| Q |
212 |
caagctccaaatattcataacaaaaata |
239 |
Q |
| |
|
||||||||||||||||||| |||||||| |
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| T |
6955624 |
caagctccaaatattcatagcaaaaata |
6955651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 34118931 - 34119033
Alignment:
| Q |
11 |
cgtcaacattacactttacgaagtttttgggtggtcgttgccatttcaccctatctagatgagtttgttgccgtgacgagggcagctcctcaatttgacg |
110 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||| |||||||| |
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|
| T |
34118931 |
cgtcaacattacactttacgaagctattgggtggttgttgccatctcaccctatcttgatgagtttgttgccatgacgagggcagctcctc-atttgacg |
34119029 |
T |
|
| Q |
111 |
tgca |
114 |
Q |
| |
|
|||| |
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|
| T |
34119030 |
tgca |
34119033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 11 - 240
Target Start/End: Original strand, 6750689 - 6750916
Alignment:
| Q |
11 |
cgtcaacattacactttacgaagtttttgggtggtcgttgccatttcaccctatctagatgagtttgttgccgtgacgagggcagctcctcaatttgacg |
110 |
Q |
| |
|
|||||||||||||||| |||||| | |||||||| | ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
6750689 |
cgtcaacattacacttcacgaagctattgggtggccattgccatctcaccctatcttgatgagtttgttgccgtgacgagggcagctcctcaatttgatg |
6750788 |
T |
|
| Q |
111 |
tgcattccaccatcctgtccacatgtaactccctgtatgaaaaatttctgccatatcccctcattttgatggtcccaaattgatacatttctactcttcc |
210 |
Q |
| |
|
||||||| |||| |||| |||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6750789 |
tgcattctgccattttgtcaacatgtaactccctctatgaatgatttctgcc--atcccctcattttgatggtcccaaattgatacatttctactcttcc |
6750886 |
T |
|
| Q |
211 |
acaagctccaaatattcataacaaaaatac |
240 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| |
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|
| T |
6750887 |
acaaactccaaatattcatagcaaaaatac |
6750916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 6467841 - 6467613
Alignment:
| Q |
11 |
cgtcaacattacactttacgaagtttttgggtggtcgttgccatttcaccctatctagatga-gtttgttgccgtgacgagggcagctcctcaatttgac |
109 |
Q |
| |
|
|||||||||||||||| |||||| | || ||||| | ||||||| ||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6467841 |
cgtcaacattacacttcacgaagctattaggtggccattgccatctcatcctatcttgatgaagtttgttgccgtgacgagggcagctcctcaatttgac |
6467742 |
T |
|
| Q |
110 |
gtgcattccaccatcctgtccacatgtaactccctgtatgaaaaatttctgccatatcccctcattttgatggtcccaaattgatacatttctactcttc |
209 |
Q |
| |
|
||||||| |||| ||||| |||||||||||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6467741 |
gtgcattttgccattctgtcaacatgtaactccctctatgaatgatttctgcc--atcccttcattttgatggtcccaaattgatacatttctactcttc |
6467644 |
T |
|
| Q |
210 |
cacaagctccaaatattcataacaaaaatac |
240 |
Q |
| |
|
||||| ||| ||||||||||| ||||||||| |
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|
| T |
6467643 |
cacaaactctaaatattcatagcaaaaatac |
6467613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 6470541 - 6470412
Alignment:
| Q |
11 |
cgtcaacattacactttacgaagtttttgggtggtcgttgccatttcaccctatctagatgagtttgttgccgtgacgagggcagctcctcaatttgacg |
110 |
Q |
| |
|
|||||||||||||||| |||||| | || ||||| | ||||||| ||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6470541 |
cgtcaacattacacttcacgaagctattaggtggccattgccatctcatcctatcttgatgagtttgttgccatgacgagggcagctcctcaatttgacg |
6470442 |
T |
|
| Q |
111 |
tgcattccaccatcctgtccacatgtaact |
140 |
Q |
| |
|
| ||||| |||| ||||| |||||||||| |
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| T |
6470441 |
tacattctgccattctgtcaacatgtaact |
6470412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 28694839 - 28694745
Alignment:
| Q |
11 |
cgtcaacattacactttacgaagtttttgggtggtcgttgccatttcaccctatctagatgagtttgttgccgtgacgagggcagctcctcaatt |
105 |
Q |
| |
|
|||||| ||||||||| |||||| | |||||||| ||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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|
| T |
28694839 |
cgtcaatattacacttcacgaagctattgggtggccgttgccatctcaccctatcttgatgagtttgttgccgtgacaagggcagctcctcaatt |
28694745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 22008968 - 22009100
Alignment:
| Q |
24 |
ctttacgaagtttttgggtggtcgttgccatttcaccctatctagatgagtttgttgccgtgacgagggcagctcctcaatttgacgtgcattccaccat |
123 |
Q |
| |
|
||||||||| | |||||||| ||||||||| |||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||| |||| |
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|
| T |
22008968 |
ctttacgaatctattgggtggccgttgccatcacaccctatcttgatgagtttgttgccgtgacgaaggcaactcctcaatttgacgtgcattccgccat |
22009067 |
T |
|
| Q |
124 |
cctgtccacatgtaactccctgtatgaaaaatt |
156 |
Q |
| |
|
||||| |||||||||||||| |||||| |||| |
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|
| T |
22009068 |
tctgtcaacatgtaactccctctatgaataatt |
22009100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 141 - 235
Target Start/End: Original strand, 21270808 - 21270900
Alignment:
| Q |
141 |
ccctgtatgaaaaatttctgccatatcccctcattttgatggtcccaaattgatacatttctactcttccacaagctccaaatattcataacaaa |
235 |
Q |
| |
|
|||| |||||| ||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||| |
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|
| T |
21270808 |
ccctctatgaataatttctgcaat--cccctcattttgatggtcccaaattgatgcatttctactcttccacaagttccaaatattcatagcaaa |
21270900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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