View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19659_low_2 (Length: 427)
Name: NF19659_low_2
Description: NF19659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19659_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 12 - 409
Target Start/End: Original strand, 23922263 - 23922660
Alignment:
| Q |
12 |
atgaacttgatatgctttcaaaaactcagcagcagtgattctcttggtgctaggtgaggaatagaatgtttgcgcacaagctctatcgcctacaaggcgc |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23922263 |
atgaacttgatatgctttcaaaaactcagcagcagtgattctcttggtgctaggtgaggaatagaatgtttgcgcacaagctctatcgcatacaaggcgc |
23922362 |
T |
|
| Q |
112 |
gcctcaaggccattggcaaagtaatgagccaccctttgagatgcatctccaaagggtgaagaatgttgcctaatcttctttaaaagatcattagcatttc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23922363 |
gcctcaaggccattggcaaagtaatgagccaccctttgagatgcttctccaaagggtgaagaatgttgcctaatctgctttaaaagatcattagcatttc |
23922462 |
T |
|
| Q |
212 |
tattgtcattggcatacatagtttgtgaacacataagcagaagattccttaagtctatcgttttgtttttgctatcatgtttcttaggacgaacctttcc |
311 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
23922463 |
tattgtcattggcatacatagcttgtgaacacataagcagaagattccttaagtctatcgttttgtttttgctatcacgtttcttgggacgaacctttcc |
23922562 |
T |
|
| Q |
312 |
ttcgttagatgaaggtggttgctcattctgcaaaaattcacgttccacgttaagcaaagctttatcaaacatttctgataattcatcctcatcaacaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23922563 |
ttcgttagatgaaggtggttgctcattctgcaaaaattcacgttccacgttaagcaaagctttatcaaacatttctgataattcatcctcatcaacaa |
23922660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 12 - 409
Target Start/End: Complemental strand, 23904721 - 23904324
Alignment:
| Q |
12 |
atgaacttgatatgctttcaaaaactcagcagcagtgattctcttggtgctaggtgaggaatagaatgtttgcgcacaagctctatcgcctacaaggcgc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
23904721 |
atgaacttgatatgctttcaaaaactcagcagcagtaattctcttagtgctcggcgaggaatagaatgtttgtgcaccagctctatcgcctacaaggcga |
23904622 |
T |
|
| Q |
112 |
gcctcaaggccattggcaaagtaatgagccaccctttgagatgcatctccaaagggtgaagaatgttgcctaatcttctttaaaagatcattagcatttc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23904621 |
gcctcaaggccattggcaaagtaatgagccaccctttgtgatgcatctccaaagggtgaagaatgttgcctaatctgctttaaaagatcattagcatttc |
23904522 |
T |
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| Q |
212 |
tattgtcattggcatacatagtttgtgaacacataagcagaagattccttaagtctatcgttttgtttttgctatcatgtttcttaggacgaacctttcc |
311 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
23904521 |
tattgtcattggcatacatagcttgtgaacacataagcagaagattccttaagtctatcgttttgtttttgctatcacgtttcttcggacgaacctttcc |
23904422 |
T |
|
| Q |
312 |
ttcgttagatgaaggtggttgctcattctgcaaaaattcacgttccacgttaagcaaagctttatcaaacatttctgataattcatcctcatcaacaa |
409 |
Q |
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||| |||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23904421 |
ttcattagatgaaggtggttgctcattctgcaaaggttcacggtccacattaagcaaagctttatcaaacatttctgataattcatcctcatcaacaa |
23904324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 10 - 274
Target Start/End: Original strand, 23912246 - 23912510
Alignment:
| Q |
10 |
agatgaacttgatatgctttcaaaaactcagcagcagtgattctcttggtgctaggtgaggaatagaatgtttgcgcacaagctctatcgcctacaaggc |
109 |
Q |
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|||||||||||||||||||||||||||||||||| || ||| ||||||||||| || ||||||||||||||||| || | || | ||||| |||| || |
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| T |
23912246 |
agatgaacttgatatgctttcaaaaactcagcagtagagatcctcttggtgctcggggaggaatagaatgtttgtgctctagtaccgtcgccgacaatgc |
23912345 |
T |
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| Q |
110 |
gcgcctcaaggccattggcaaagtaatgagccaccctttgagatgcatctccaaagggtgaagaatgttgcctaatcttctttaaaagatcattagcatt |
209 |
Q |
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| ||||||||||||||||||||||||||||||| |||||| | | |||| ||| |||||||||||||||||||||||| ||| | || ||||||||||| |
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| T |
23912346 |
gtgcctcaaggccattggcaaagtaatgagccaacctttgtggtccatccccagagggtgaagaatgttgcctaatctgcttcagtagctcattagcatt |
23912445 |
T |
|
| Q |
210 |
tctattgtcattggcatacatagtttgtgaacacataagcagaagattccttaagtctatcgttt |
274 |
Q |
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|| |||||||||||||||| || |||||||||||||||||||||||||||||| ||||| |||| |
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| T |
23912446 |
cctgttgtcattggcatacacagattgtgaacacataagcagaagattccttaaatctattgttt |
23912510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 23912628 - 23912680
Alignment:
| Q |
356 |
ccacgttaagcaaagctttatcaaacatttctgataattcatcctcatcaaca |
408 |
Q |
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|||| ||||||||| | ||||||||||| |||||||||||||||||||||||| |
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| T |
23912628 |
ccacattaagcaaaaccttatcaaacatctctgataattcatcctcatcaaca |
23912680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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