View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1965_high_12 (Length: 294)
Name: NF1965_high_12
Description: NF1965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1965_high_12 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 294
Target Start/End: Original strand, 1717210 - 1717484
Alignment:
| Q |
20 |
attatcaataaagttaactattattggcaaggatttggtttttacctacaaaactaagagcatttgatgaagagacaccactaagatcccatgctctatc |
119 |
Q |
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| T |
1717210 |
attatcaataaagttaactattattggcaaggatttggtatttacctacaaaactaagagcatttgatgaagagacaccactaagatcccaggctctatc |
1717309 |
T |
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| Q |
120 |
atttcttatgtagtcaatattttgttgaacactcatttccttaaatttatccgaatacatattgtagtaatgcacatcaaggactactttatcaaagcct |
219 |
Q |
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| T |
1717310 |
atttcttatgtagtcaatattttgttgaacattcatgccattgaatttgtccgaatacaaattgtagtaatgcacatcaaggactactttatcaaagcct |
1717409 |
T |
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| Q |
220 |
ttgacaaatgagagaagaactttagaatctgtggccaatggatttgacatgatcacataagtatttgggatgtat |
294 |
Q |
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| T |
1717410 |
ttgacaaatgagagaagaagtttagaatctgtggccaatggatttgacatgatcacataagtatttgggatgtat |
1717484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 42 - 294
Target Start/End: Original strand, 1738727 - 1738981
Alignment:
| Q |
42 |
attggcaaggatttggtt--tttacctacaaaactaagagcatttgatgaagagacaccactaagatcccatgctctatcatttcttatgtagtcaatat |
139 |
Q |
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| T |
1738727 |
attggcaaggatttggttattttacctacaaaactaagagcatttgaagaagagaaaccactaagatccccggctctgtcatttcttatgaagtcaatat |
1738826 |
T |
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| Q |
140 |
tttgttgaacactcatttccttaaatttatccgaatacatattgtagtaatgcacatcaaggactactttatcaaagcctttgacaaatgagagaagaac |
239 |
Q |
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| T |
1738827 |
tttgttgaacattcatgccattgaatttgtcccaaaacatattgtagtaatgcacatcaaggactactttatcaaagcctttgacaaatgagagaagaag |
1738926 |
T |
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| Q |
240 |
tttagaatctgtggccaatggatttgacatgatcacataagtatttgggatgtat |
294 |
Q |
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| T |
1738927 |
tttggaatctgtggccaatgggtttgacatgatcacataagtatttgggatgtat |
1738981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 49 - 280
Target Start/End: Original strand, 1748591 - 1748822
Alignment:
| Q |
49 |
aggatttggtttttacctacaaaactaagagcatttgatgaagagacaccactaagatcccatgctctatcatttcttatgtagtcaatattttgttgaa |
148 |
Q |
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| T |
1748591 |
aggatttggtttttacctataaaagtaagagcatttgttgaagatacaccagcaagatctgatgctctttcatttcttatgaagtcgatattttgttgaa |
1748690 |
T |
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| Q |
149 |
cactcatttccttaaatttatccgaatacatattgtagtaatgcacatcaaggactactttatcaaagcctttgacaaatgagagaagaactttagaatc |
248 |
Q |
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| T |
1748691 |
cattcatgccattgaatttttcccaaaacatattgtagtaatgcacatcaaggactactttgttgaagccactaacaaatgagagaagagctttagaatc |
1748790 |
T |
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| Q |
249 |
tgtggccaatggatttgacatgatcacataag |
280 |
Q |
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| T |
1748791 |
tccatccaatggatttgacatgatcacataag |
1748822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 61 - 287
Target Start/End: Original strand, 1753919 - 1754145
Alignment:
| Q |
61 |
ttacctacaaaactaagagcatttgatgaagagacaccactaagatcccatgctctatcatttcttatgtagtcaatattttgttgaacactcatttcct |
160 |
Q |
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| T |
1753919 |
ttacctacaaaactaagagcgtttgttgaagagacgccgctaagatctgaggctctttcgttgtttatgtagtcaatattttgttgaacattcatgttag |
1754018 |
T |
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| Q |
161 |
taaatttatccgaatacatattgtagtaatgcacatcaaggactactttatcaaagcctttgacaaatgagagaagaactttagaatctgtggccaatgg |
260 |
Q |
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| T |
1754019 |
tgaatttgtccgaataaagattgtagtaatgcacatcaaggacaactttgttgaatccagtgacaaatgagagaagtactttagaatctgcatccaatgg |
1754118 |
T |
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| Q |
261 |
atttgacatgatcacataagtatttgg |
287 |
Q |
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| T |
1754119 |
gtttgacattatcacataagcatttgg |
1754145 |
T |
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