View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1965_high_4 (Length: 452)
Name: NF1965_high_4
Description: NF1965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1965_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 119 - 432
Target Start/End: Complemental strand, 40043221 - 40042908
Alignment:
| Q |
119 |
gtctaaagatattatctatattctttcatgtgtcttgttacccctgtttgctctgttctctttcaatttcttgaggcacaagcaacaaaataacaaagac |
218 |
Q |
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| T |
40043221 |
gtctaaagatattatctatattctttcatgtgttttgtttcccctgtttgctctgttctctttcaatttcttgaggcacaagcaacaaaataacaaagac |
40043122 |
T |
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| Q |
219 |
aaaagaaagcttccaccaggtgaaatgggatttccattgataggagagaccatggaattcttcaatgctcaaaggagaaacaaattgtatgaagattttg |
318 |
Q |
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| T |
40043121 |
aaaagaaagcttccaccaggtgaaatgggatttccattgataggagagaccatggaattcttcaatgctcaaaggagaaacaaattgtatgaagattttg |
40043022 |
T |
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| Q |
319 |
ttcatcctcgaatcacgaaacacggaaagatcttcaaaacaaggatcatagggtcaccaactgtgatagtaaatggagctgaggcaaataagtttatttt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40043021 |
ttcatcctcgaatcacgaaacacggaaagatcttcaaaacaaggatcatagggtcaccaactgtgatagtaaatggagctgaggcaaataagtttatttt |
40042922 |
T |
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| Q |
419 |
gtccaatgagttca |
432 |
Q |
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|||||||||||||| |
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| T |
40042921 |
gtccaatgagttca |
40042908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 40043329 - 40043288
Alignment:
| Q |
11 |
caaaggaatcctataaatatgtgaaccaacatactagaacct |
52 |
Q |
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| T |
40043329 |
caaaggaatcctataaatatgtgaaccaacatgctagaacct |
40043288 |
T |
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