View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1965_high_9 (Length: 346)
Name: NF1965_high_9
Description: NF1965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1965_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 24 - 321
Target Start/End: Original strand, 2782109 - 2782404
Alignment:
| Q |
24 |
attagcatcttccaatttacaaacacacgcaca----------tgcacgcacagaatatacctggtgggggtggaaggggagaggctgagattcttgann |
113 |
Q |
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| T |
2782109 |
attagcatcttccaatttacaaacacacacacacacacccatgtgcacacacagaatatacctgg---gggtggaaggggattggctgagattcttgatt |
2782205 |
T |
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| Q |
114 |
nnnnnnatatgaatgtttttactttctcttgcatggttgggttatgtatgtatatcaaaatcaaatacttccatggaatacttttgattgtgatacaaat |
213 |
Q |
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| T |
2782206 |
ttttc---atgattgttt--actttctcttgcatggttggattatg----tatatcaaaatcaaatacttccatggaatacttttgattatgatacaaat |
2782296 |
T |
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| Q |
214 |
tttcagcatttgcaaacggctaataagataagcacaataacatcctcgtctcctcttatttctttacttttggaaaacaaattgcaggagaatatgttgg |
313 |
Q |
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| T |
2782297 |
tttcagcatttgcaaacgtctaataagataagcacaataacatccccgtctcctcttttttctttccttttggaaaacaaattgcaggagaatatgttgg |
2782396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 81 - 321
Target Start/End: Original strand, 2791834 - 2792067
Alignment:
| Q |
81 |
ggggtggaaggggagaggctgagattcttgannnnnnnnatatgaatgtttttactttctcttgcatggttgggttatgtatgtatatcaaaatcaaata |
180 |
Q |
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| T |
2791834 |
ggggtgaaaggggagaggctgagattcttgattttttt-atatgaatgttt--actttctcttgcatggttggattatctat----atcaaaatcaaata |
2791926 |
T |
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| Q |
181 |
cttccatggaatacttttgattgtgatacaaattttcagcatttgcaaacggctaataagataagcacaataacatcctcgtctcctcttatttctttac |
280 |
Q |
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| T |
2791927 |
cctccttggaatacttttgattatgatacaaattttcagcatttgcaaacgtctaataagataagcacaataacatccccgtctcctcttttttctttcc |
2792026 |
T |
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| Q |
281 |
ttttggaaaacaaattgcaggagaatatgttggtcttacag |
321 |
Q |
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| T |
2792027 |
ttttggaaaacaaattgcaggagaatatgttggtcttacag |
2792067 |
T |
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