View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1965_low_10 (Length: 380)
Name: NF1965_low_10
Description: NF1965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1965_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 350
Target Start/End: Original strand, 42710841 - 42711174
Alignment:
| Q |
19 |
gaagatacgtgaatggagtttgtttacttattaaggttttttctgtaagtggatagacatctcatgnnnnnnnnn--aagatgtttgatttctttcataa |
116 |
Q |
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| T |
42710841 |
gaagatacgtcaatggagtttgtttacttattaaggttttttctgtaagtggatatacatctcatgtttttttttttaagatgtttgatttctttcataa |
42710940 |
T |
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| Q |
117 |
atcttttaataattatttcagtaagtatttttgagttatttttgttgtttctcaatctgtataatggcacctaacattagtagggagaagaaatgaaaga |
216 |
Q |
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| T |
42710941 |
atcttttaataattatttcagtaagtatttttgagttatttttgttgtttctcaatctgtataatggcacctaacattagtagggagaagaaatgaaaga |
42711040 |
T |
|
| Q |
217 |
gatatcacattgttgtctcatcacgtcaagaaaggtaattaaggatgaccttcaaaaatactaggcaagcttgttgatatggataagaagatgaatgtca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42711041 |
gatatcacattgttgtctcatcacgtcaagaaaggtaattaaggatgaccttaaaaaatactaggcaagcttgttgatatggataagaagatgaatgtca |
42711140 |
T |
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| Q |
317 |
tttcttctgcgttataggaaaaatggttgcacca |
350 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
42711141 |
tttcttctgcgttataggaaaaatggttgcacca |
42711174 |
T |
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