View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1965_low_14 (Length: 346)
Name: NF1965_low_14
Description: NF1965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1965_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 42763956 - 42763638
Alignment:
| Q |
1 |
ttacaacaaaagacaatattataaaaggataaaaaatgtgtacctcgcataccaggatgcttaaagttatactccctattgggatgaagcatggttagaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42763956 |
ttacaacaaaagacaatattataaaaggataaaaaatgtgtacctcgcataccaggatgcttaaagttatactccctattgggatgaagcatggttagaa |
42763857 |
T |
|
| Q |
101 |
agtgggaagatgcttgctcccatacctatatcattgataatttgaataaagccagagcaagggaggttataccatcccattgcttgatatgcatcaatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42763856 |
agtgggaagatgcttgctcccatacctatatcattgataatttgaataaagccagagcaagggaggttataccaacccattgcttgatatgcatcaatct |
42763757 |
T |
|
| Q |
201 |
atcaaagtaattaatcaagttattataatgaattaaaagaaagaacaaaacagggcaatcgaattgtgaatccattgtccaataagtgaatagtttgatg |
300 |
Q |
| |
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||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42763756 |
atcaaagtaattagacaag---ttataatgaattaaaagaaagaacaaagcggggcaatcgaattgagaatccattgtccaataagtgaatagtttgatg |
42763660 |
T |
|
| Q |
301 |
ttatcgccaccatataaatctg |
322 |
Q |
| |
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|||||| ||||||||||||||| |
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| T |
42763659 |
ttatcgtcaccatataaatctg |
42763638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 42806711 - 42806393
Alignment:
| Q |
1 |
ttacaacaaaagacaatattataaaaggataaaaaatgtgtacctcgcataccaggatgcttaaagttatactccctattgggatgaagcatggttagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42806711 |
ttacaacaaaagacaatattataaaaggataaaaaatgtgtacctctcataccaggatgcttaaagttatactccctattgggaagaagcatggttagaa |
42806612 |
T |
|
| Q |
101 |
agtgggaagatgcttgctcccatacctatatcattgataatttgaataaagccagagcaagggaggttataccatcccattgcttgatatgcatcaatct |
200 |
Q |
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|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42806611 |
agtgggaagatgcttgctcccagacctatatc---gataatttgaataaagccagagcaagggaggttataccatcccattgcttgatatgcatcaatct |
42806515 |
T |
|
| Q |
201 |
atcaaagtaattaatcaagttattataatgaattaaaagaaagaacaaaacagggcaatcgaattgtgaatccattgtccaataagtgaatagtttgatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
42806514 |
atcaaagtaattaatcaagttattataatgaattaaaagaaagaacaaaatggggcaatcgaattgagaatccactgtccaataagtgaatagtttgatg |
42806415 |
T |
|
| Q |
301 |
ttatcgccaccatataaatctg |
322 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
42806414 |
ttatcgccaccatataaatctg |
42806393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 33049930 - 33049612
Alignment:
| Q |
1 |
ttacaacaaaagacaatattataaaaggataaaaaatgtgtacctcgcataccaggatgcttaaagttatactccctattgggatgaagcatggttagaa |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33049930 |
ttacaacaaaagacaataatataaaaggataaaaaatgtgtacctcacataccaggatgcttaaagttatactccctattgggaagaagcatggttagaa |
33049831 |
T |
|
| Q |
101 |
agtgggaagatgcttgctcccatacctatatcattgataatttgaataaagccagagcaagggaggttataccatcccattgcttgatatgcatcaatct |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33049830 |
agtgggaagatgcttgctcccagacctatatc---gataatttgaataaagccagagcaagggaggttataccatcccattgcttgatatgcatcaatct |
33049734 |
T |
|
| Q |
201 |
atcaaagtaattaatcaagttattataatgaattaaaagaaagaacaaaacagggcaatcgaattgtgaatccattgtccaataagtgaatagtttgatg |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||| |
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|
| T |
33049733 |
atcaaagtaattaaacaagttattataatgaattaaaagaaagaacaaaacggggcaatcgaattgagaatccattgtctaataagtgaatagtttgatg |
33049634 |
T |
|
| Q |
301 |
ttatcgccaccatataaatctg |
322 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
33049633 |
ttatcgccaccatataaatctg |
33049612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 26429814 - 26429933
Alignment:
| Q |
77 |
tattgggatgaagcatggttagaaagtgggaagatgcttgctcccatacctatatcattgataatttgaataaagccagagcaagggaggttataccatc |
176 |
Q |
| |
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|||||||| ||| ||| ||||||||||||| | || |||||||| | ||||| ||||| ||||||||||||||||||| ||| |||| ||||| || | |
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| T |
26429814 |
tattgggaagaaccatagttagaaagtggggatatacttgctccaagggctataccattgttaatttgaataaagccagaacaaaggagattataacaac |
26429913 |
T |
|
| Q |
177 |
ccattgcttgatatgcatca |
196 |
Q |
| |
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| ||||||||||||||||| |
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|
| T |
26429914 |
cagttgcttgatatgcatca |
26429933 |
T |
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