View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1965_low_16 (Length: 312)
Name: NF1965_low_16
Description: NF1965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1965_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 88 - 297
Target Start/End: Original strand, 42711221 - 42711421
Alignment:
| Q |
88 |
acaatggagtttgttgtaggttctctagagtttattttcaaagttacccctaactttgatgtatcattttgaggttaaggacgcttttgagatgagggat |
187 |
Q |
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| T |
42711221 |
acaatggagtttgttgtaggttctctagagtttattttc---------cctaactttgatgtatcattttgaggttaaggacgcttttgagatgaaggat |
42711311 |
T |
|
| Q |
188 |
ggttctgagatgaata-caatattgagggtcaatgacgatannnnnnngcttgtatttgtatttggtttgtgcatttggccatcacctaatacaattcgg |
286 |
Q |
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|||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42711312 |
ggttctgagatgaataccgatattgagggtcaatgacgat-gttttttgcttgtatttgtatttggtttgtgcatttggccatcacctaatacaattcgg |
42711410 |
T |
|
| Q |
287 |
tatttcctatg |
297 |
Q |
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||||||||||| |
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| T |
42711411 |
tatttcctatg |
42711421 |
T |
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