View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1965_low_18 (Length: 287)
Name: NF1965_low_18
Description: NF1965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1965_low_18 |
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| [»] scaffold0092 (1 HSPs) |
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Alignment Details
Target: scaffold0092 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 22684 - 22905
Alignment:
| Q |
18 |
ctttaaaattttatttattaaaaatctaatgaactttcattatgttgatgtggcttgtgcatgtataagtaatattctaagtacaagtgttttgtgtgtc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22684 |
ctttaaaattttatttattaaaaatctaatgaactttcattatgttgatgtggcttgtgcatgtataagtaatattctaagtacaagtgttttgtgtgtc |
22783 |
T |
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| Q |
118 |
tggatgtgggagtcaagaaacaacaacacatttatttatgggatgtgatgtgatgtcttcggatccctttggtcttaggtttgagtttggttaggtattt |
217 |
Q |
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| T |
22784 |
tggatgtgggagtcaagaaacagcaacacatttatttatgggatgtgacgt-----cttcggatccctttggtctcaggtttgggtttggctaggtattt |
22878 |
T |
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| Q |
218 |
ctaaggttttacctggtgatcttcatc |
244 |
Q |
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| T |
22879 |
ctaaggttttacctggtgatcttcatc |
22905 |
T |
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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 108 - 244
Target Start/End: Complemental strand, 24518815 - 24518684
Alignment:
| Q |
108 |
tttgtgtgtctggatgtgggagtcaagaaacaacaacacatttatttatgggatgtgatgtgatgtcttcggatccctttggtcttaggtttgagtttgg |
207 |
Q |
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| T |
24518815 |
tttgtgtgtctggatgtgggagtcaagaaacaacaacgcatttatttttgggttgtgacgt-----cttcggatccctttggtctcaggtttggctttgg |
24518721 |
T |
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| Q |
208 |
ttaggtatttctaaggttttacctggtgatcttcatc |
244 |
Q |
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| T |
24518720 |
ctaggtatttctacggtttcacctcgtgatcttcatc |
24518684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 219
Target Start/End: Complemental strand, 3278535 - 3278431
Alignment:
| Q |
109 |
ttgtgtgtctggatgtgggagtcaagaaacaacaacacatttatttatgggatgtgatgtgatgtcttcggatccctttggtcttaggtttgagtttggt |
208 |
Q |
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| T |
3278535 |
ttgtgtgtctggatgtgggagtcaagagacgacaaatcatttatttttg------gatgggacgtcttcggatcactttgatctcaggtttggctttggt |
3278442 |
T |
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| Q |
209 |
taggtatttct |
219 |
Q |
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| T |
3278441 |
tgggtatttct |
3278431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 167
Target Start/End: Complemental strand, 6022842 - 6022785
Alignment:
| Q |
110 |
tgtgtgtctggatgtgggagtcaagaaacaacaacacatttatttatgggatgtgatg |
167 |
Q |
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| T |
6022842 |
tgtgtgtctggatgtgggagtcaggaaacggtaacacatttatttttgagatgtgatg |
6022785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 108 - 244
Target Start/End: Original strand, 25317320 - 25317448
Alignment:
| Q |
108 |
tttgtgtgtctggatgtgggagtcaagaaacaacaacacatttatttatgggatgtgatgtgatgtcttcggatccctttggtcttaggtttgagtttgg |
207 |
Q |
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|||||||||| | |||||||| ||||||||||||||||||||||||| |||||||||| | ||||||||||||||||| ||||||| ||||| |
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| T |
25317320 |
tttgtgtgtccgaatgtgggattcaagaaacaacaacacatttatttttgggatgtga--------cgtcggatccctttggtctaaggtttggctttgg |
25317411 |
T |
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| Q |
208 |
ttaggtatttctaaggttttacctggtgatcttcatc |
244 |
Q |
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||| |||||||| ||||| |||| |||||||||||| |
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| T |
25317412 |
ctagatatttctacggtttcacctcgtgatcttcatc |
25317448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 32303155 - 32303108
Alignment:
| Q |
107 |
ttttgtgtgtctggatgtgggagtcaagaaacaacaacacatttattt |
154 |
Q |
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| T |
32303155 |
ttttgtgtgtctggttgtggcagccacgaaacaacaacacatttattt |
32303108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 21376018 - 21375985
Alignment:
| Q |
111 |
gtgtgtctggatgtgggagtcaagaaacaacaac |
144 |
Q |
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| T |
21376018 |
gtgtgtctggatgtgggagtcaagaaacagcaac |
21375985 |
T |
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