View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1965_low_2 (Length: 599)
Name: NF1965_low_2
Description: NF1965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1965_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 10 - 583
Target Start/End: Complemental strand, 53044091 - 53043518
Alignment:
| Q |
10 |
catcatcaggcattgctgcattagttgtctgaggccaagaatcaaatttggacctgaacatcactgtttcaaatccttccattacgcagattatctggga |
109 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
53044091 |
catcttcaggcattgctgcattagttgtctgaggccaagaatcaaatttggacctgaacatcactgtttcaaatccttccattacgcggattatctggga |
53043992 |
T |
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| Q |
110 |
ttttggtcgattggtgctactgactagttcctgtttttaaccagcagaaacccaataatcattaacactcctaacaaatgctcaacaataccgagaagta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53043991 |
ttttggtcgattggtgctactgactagttcctgtttttaaccagcagaaacccaataatcattaacactcctaacaaatgctcaacaataccgagaagta |
53043892 |
T |
|
| Q |
210 |
aagaagagaaattacatctgtagatccacttgcgcttttcctttcatcgagagatgtgtttcgtcctatccaaacaaacacctctaacccacaatctaaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53043891 |
aagaagagaaattacatctgtagatccacttgcgcttttcctttcatcgagagatgtgtttcgtcctatccaaacaaacacctctaacccacaatctaaa |
53043792 |
T |
|
| Q |
310 |
atatagcattcgttggtgtccagtaattcctttgtcaaagaatcggtttcaaaagggtctgccttccccttttccacactggaaaaatgataattttatt |
409 |
Q |
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| T |
53043791 |
atatagcatttgttggtgtccagtaattcctttgtcaaagaatcggtttcaaaaggctctgccttccccttttccacactggaaaaatgataattttatt |
53043692 |
T |
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| Q |
410 |
ataaatagagtattataaagtctaatgtttcgatataatttcctgagtgtagatgtcacaataattagaattatttccaagtcttctgaattatcaactt |
509 |
Q |
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| T |
53043691 |
ataaatagagtattataaagtctaatgtttcgatataatttcctcagtgtagatgtcacaataattagaattatttccaagtcttctgaattatcaactt |
53043592 |
T |
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| Q |
510 |
aagcaacttcaggctaaaatggtaagtttactacctttttatattggtaaacaacataagtttacagaaaatgg |
583 |
Q |
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| T |
53043591 |
aagcaacttcaggctaaaatggtaagtttactacctttttatattggtaaacaacataagtttacagaaaatgg |
53043518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 15963120 - 15963178
Alignment:
| Q |
36 |
gtctgaggccaagaatcaaatttggacctgaacatcactgtttcaaatccttccattac |
94 |
Q |
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| T |
15963120 |
gtctgaggccaagaatcaaacttggacttaaacaacactgtttcaaatccttcaattac |
15963178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 234 - 424
Target Start/End: Original strand, 15963334 - 15963524
Alignment:
| Q |
234 |
tccacttgcgcttttcctttcatcgagagatgtgtttcgtcctatccaaacaaacacctctaacccacaatctaaaatatagcattcgttggtgtccagt |
333 |
Q |
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||||||||| ||||| |||||||| || || ||||||| ||| ||||| || || | || ||||||||||| | |||||| |||| || ||||| || |
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| T |
15963334 |
tccacttgcactttttctttcatcaagggaggtgtttcttcccatccagacgaatatttccaacccacaatccagaatataacatttatttgtgtctaga |
15963433 |
T |
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| Q |
334 |
aattcctttgtcaaagaatcggtttcaaaagggtctgccttccccttttccacactggaaaaatgataattttattataaatagagtatta |
424 |
Q |
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|| ||| || |||||||||||| |||| ||| ||||||| |||||||| |||||| |||| |||||||| || |||| ||||| |||| |
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| T |
15963434 |
aactcccttttcaaagaatcggcctcaacaggttctgcctgtcccttttcaacactgtaaaatcgataatttcatgataactagagcatta |
15963524 |
T |
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