View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1965_low_21 (Length: 249)
Name: NF1965_low_21
Description: NF1965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1965_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 1717188 - 1716959
Alignment:
| Q |
1 |
tattgaggatatctaaatgtttttacttttctatttgggtaggggaatggacagctgaatggagtatagaaggggcgcctatgcaagactaccaaagata |
100 |
Q |
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| T |
1717188 |
tattgaggatatctaaatgtttttacttttctatttgggtaggggaatggacagctgaatggagtatacaaggggcacctatgcaagactaccaaagata |
1717089 |
T |
|
| Q |
101 |
tgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggttgatc |
200 |
Q |
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| T |
1717088 |
tgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggttgatc |
1716989 |
T |
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| Q |
201 |
gagaatggttacataaagctctagatgcaa |
230 |
Q |
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| T |
1716988 |
gagaatggttacataaagctctagatgcaa |
1716959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 1738594 - 1738358
Alignment:
| Q |
1 |
tattgaggatatctaaatgtttttacttttctatttgggtaggggaatggacagctgaatggagtatagaaggggcgcctatgcaagactaccaaagata |
100 |
Q |
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| T |
1738594 |
tattgaggatatctaaatgattttacttttctattttggtaggggaatggacggctgaatggagcatacaaggtgcgtctatgcaagactaccaaagata |
1738495 |
T |
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| Q |
101 |
tgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggttgatc |
200 |
Q |
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| T |
1738494 |
tgtccaaacacaaatggatgtatattctcgtgcaacatttggatgggctttttggtcctataaatgtcagaataacaaatggagtctcaagtggttgatc |
1738395 |
T |
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| Q |
201 |
gagaatggttacataaagctctagatgcaaggggttc |
237 |
Q |
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| T |
1738394 |
gaaaatggttacataaagctctagatgtaaggggttc |
1738358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 1753662 - 1753505
Alignment:
| Q |
79 |
ctatgcaagactaccaaagatatgtccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataacca |
178 |
Q |
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|||||||||||||||||||||||| |||||||||| | ||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
1753662 |
ctatgcaagactaccaaagatatggccaagcacaactagatgtgtattctcgtgcaacatttggatgggcttattgggcatacaaatgtcaatataacca |
1753563 |
T |
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| Q |
179 |
ttggagtctcaagtggttgatcgagaatggttacataaagctctagatgcaaggggtt |
236 |
Q |
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| T |
1753562 |
ttggagtctcaagtggatgatcgagaatggttacataaagctctagatgtaaggggtt |
1753505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 104 - 220
Target Start/End: Complemental strand, 1748381 - 1748265
Alignment:
| Q |
104 |
ccaagcacaaatggatgtgtattctcatgcaacatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggttgatcgag |
203 |
Q |
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|||||| ||| ||||||||||||||| ||||||||||||||||| |||||| ||||||||||||| | ||| | |||||| || |||||| |||||||| |
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| T |
1748381 |
ccaagcccaattggatgtgtattctcgggcaacatttggatgggcttattggtcctacaaatgtcagtttaatcgttggagccttaagtggatgatcgag |
1748282 |
T |
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| Q |
204 |
aatggttacataaagct |
220 |
Q |
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| T |
1748281 |
aatggttacataaagct |
1748265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 38087047 - 38086985
Alignment:
| Q |
135 |
acatttggatgggcctattgggcctacaaatgtcaatataaccattggagtctcaagtggttg |
197 |
Q |
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|||||||||||||| |||||||| ||||||||| | | |||| | |||||||| ||||||||| |
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| T |
38087047 |
acatttggatgggcatattgggcttacaaatgtgactctaacaactggagtcttaagtggttg |
38086985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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