View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1965_low_23 (Length: 238)
Name: NF1965_low_23
Description: NF1965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1965_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6813521 - 6813299
Alignment:
| Q |
1 |
ttacacattgctgtgtatctgaagcaaacactctttgtgacaaccttgttagataaaatcagcaaagacatgtgttgggacatcctacgaatgcaaaact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6813521 |
ttacacattgctgtgtatctgaagcaaacactctttgtgacaaccttgttagataaaatcagcaaagacatgtgttgggacatcctacgaatgcaaaact |
6813422 |
T |
|
| Q |
101 |
caaagggaaatactcctcttcatgttgcagcagagcttgggaatgtagaaatttgcaacaacatagctaaaagagatcctatcctcatttcctatcgaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
6813421 |
caaagggaaatactcctcttcatgttgcagcagagcttgggaatgtagaaatttgcaacaacatagctaaaagagatcctatcctcatttcctgtcgaaa |
6813322 |
T |
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| Q |
201 |
tttcgaaggcgaaactcctcttt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
6813321 |
tttcgaaggcgaaactcctcttt |
6813299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 25 - 223
Target Start/End: Complemental strand, 6834529 - 6834331
Alignment:
| Q |
25 |
caaacactctttgtgacaaccttgttagataaaatcagcaaagacatgtgttgggacatcctacgaatgcaaaactcaaagggaaatactcctcttcatg |
124 |
Q |
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| T |
6834529 |
caaacaatttttgtgacaaccttgttagataacataagccaagatatgtgccggaacatcctaagaatgcaaaactcaaagggaaatactcctcttcatg |
6834430 |
T |
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| Q |
125 |
ttgcagcagagcttgggaatgtagaaatttgcaacaacatagctaaaagagatcctatcctcatttcctatcgaaatttcgaaggcgaaactcctcttt |
223 |
Q |
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| T |
6834429 |
ttgcagcagagcttgggaatgtagaaatttgcaacaatatagccagaagagatcccatcctcatttcatatcgaaattttgaaggcgagactcctcttt |
6834331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6820077 - 6819855
Alignment:
| Q |
1 |
ttacacattgctgtgtatctgaagcaaacactctttgtgacaaccttgttagataaaatcagcaaagacatgtgttgggacatcctacgaatgcaaaact |
100 |
Q |
| |
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|||||||||||||||||| ||| |||||| |||||||||| ||||||||||||| || || ||||| |||| | |||||||| ||| |||||||| |
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| T |
6820077 |
ttacacattgctgtgtatgtgagccaaacatgctttgtgacagccttgttagataacatatgccaagacgtgtgcatgaacatcctaagaacgcaaaact |
6819978 |
T |
|
| Q |
101 |
caaagggaaatactcctcttcatgttgcagcagagcttgggaatgtagaaatttgcaacaacatagctaaaagagatcctatcctcatttcctatcgaaa |
200 |
Q |
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| ||||||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
6819977 |
cgaagggaaataccccccttcatgttgctgcagagcttgggaatgtagacatttgcaacaacatagctaaaagatgtcctatcctcatttcgtatcgaaa |
6819878 |
T |
|
| Q |
201 |
tttcgaaggcgaaactcctcttt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
6819877 |
tttcgaaggcgaaactcctcttt |
6819855 |
T |
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Back To:
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