View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1965_low_24 (Length: 227)
Name: NF1965_low_24
Description: NF1965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1965_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 1e-55; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 6813916 - 6813784
Alignment:
| Q |
4 |
atttaatggtcaaatttttagattacttaatttagtgaatttaatccttacatactcttcttacttcctccaagcttacatcaacgcataaatttgtgaa |
103 |
Q |
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| T |
6813916 |
atttaatggtcaaatttttagattactta-----gtgaatttaatccttacatacccttcttacttcctccaagcttacatcaaagcataaatttgtgaa |
6813822 |
T |
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| Q |
104 |
tatggaaacaatagaatagtattcatagtgactactag |
141 |
Q |
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| T |
6813821 |
tatggaaacaatagaatagtattcatagtgactactag |
6813784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 6813754 - 6813692
Alignment:
| Q |
165 |
ggtaggtactcataaacaaggaatataactaattaagctcttcaatcactctctcacacacac |
227 |
Q |
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| T |
6813754 |
ggtaggtactcataaacaaggaatataactaattaagctcttcaatcactctcacacacacac |
6813692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 137
Target Start/End: Complemental strand, 6820423 - 6820330
Alignment:
| Q |
44 |
ttaatccttacatactcttcttacttcctccaagcttacatcaacgcataaatttgtgaatatggaaacaatagaatagtattcatagtgacta |
137 |
Q |
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| T |
6820423 |
ttaatccttacacattctttttacttccgacaagcttacttcaacacattcttttgtgaatatggaaacaataaaataatatgcaaagtgacta |
6820330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 6834889 - 6834807
Alignment:
| Q |
37 |
agtgaatttaatccttacatactcttcttacttcctccaagcttacatcaacgcataaatttgtgaatatggaaacaatagaata |
121 |
Q |
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| T |
6834889 |
agtgaatttaatccttacatattctttttacttcctccaagtttacttcaacatatacttttgtga--atggaaacaataaaata |
6834807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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