View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1965_low_26 (Length: 216)
Name: NF1965_low_26
Description: NF1965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1965_low_26 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 48 - 216
Target Start/End: Original strand, 42455587 - 42455755
Alignment:
| Q |
48 |
aaacttttgaatgtttgttagatattttgaatatttcaaaagtaaattaattcacattttattttgatccaattgattaaactttgttttcataaattac |
147 |
Q |
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| T |
42455587 |
aaacttttgaatgtttgttagatattttgaatatttcaaaagtaaattaattcacattttattttgatctaattgattaaactttgttttcataaattac |
42455686 |
T |
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| Q |
148 |
ctttgatgtcttggtaaaatcagttttttactcttacgtatgnnnnnnntcaatcggaatgggataatt |
216 |
Q |
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| T |
42455687 |
ctttgatgtcttggtaaaatcagttttttactcttacgtatgaaaaaaatcaatcggaaggggataatt |
42455755 |
T |
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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 42455541 - 42455574
Alignment:
| Q |
1 |
ctttgatgatgtttaaccaaaaaatttattttga |
34 |
Q |
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| T |
42455541 |
ctttgatgatgtttaaccaaaaaaattattttga |
42455574 |
T |
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