View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1965_low_3 (Length: 499)
Name: NF1965_low_3
Description: NF1965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1965_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 13 - 483
Target Start/End: Complemental strand, 21114576 - 21114105
Alignment:
| Q |
13 |
aatatttgccatcaaataaagacaacctgataacagaatcgtgtacacaaatcagtcaaagatccatcattacggtatatatggtttggtcacttaattt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21114576 |
aatatttgccatcaaataaagacaacctgataacagaatcgtgtacacaaattagtcaaagatccatcattacggtaaatatggtttggtcacttaattt |
21114477 |
T |
|
| Q |
113 |
cttgatgacaaagaaacatgttagtgcttgtcatgtacaaaatatatgtgaaaaatacagg-tatagtgtcaaattttagtgtcagtctcagattagtga |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||| |
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| T |
21114476 |
cttgatgacaaagaaacatgttagtgcttgtcatgtacaaaatatatgtgaaaaatacagggtatagtgtcaaattttagtctcaggctcagattagtga |
21114377 |
T |
|
| Q |
212 |
aaaatacaaaaggccaactttgtagttggaataagttgtctaatttaagcaataagattgagccttgtttggactgcaacaaataaattttatcatagat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21114376 |
aaaatacaaaaggccaactttgtagttggaataagttgtctaatttaagcaataagattgagccttgtttggactgcaacaaataaattttatcatagat |
21114277 |
T |
|
| Q |
312 |
atatggtcaatacattttcagaaagcaaaaacatcataccttatgtaagagctcaagaagtagatgcaccgtcagcagagctaagttcgcaataacagat |
411 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| | |
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| T |
21114276 |
atatggtcaatacattttcagaaagcaaaaacagcataccttatgtaagagctcaagaagtagatgcactgtcagctgagctaagttcgcaataacagct |
21114177 |
T |
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| Q |
412 |
gcacagaaggatacttgagctttcactttaacctttacaccatcacacaactcggttctttttacaccttct |
483 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||| |
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| T |
21114176 |
gcacagaaggatacttgagctttcactttaacctttacactatcacacaacacgattctttttacaccttct |
21114105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 21122003 - 21121935
Alignment:
| Q |
13 |
aatatttgccatcaaataaagacaacctgataacagaatcgtgtacacaaatcagtcaaagatccatca |
81 |
Q |
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||||||||||||||| ||||| ||||||||||| | |||| ||| |||||| |||||||||||| |||| |
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| T |
21122003 |
aatatttgccatcaagtaaaggcaacctgataatataatcatgtgcacaaaccagtcaaagatctatca |
21121935 |
T |
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