View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1965_low_4 (Length: 489)
Name: NF1965_low_4
Description: NF1965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1965_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 4362780 - 4363258
Alignment:
| Q |
1 |
cctcaagcaacctcttatttattcttagatatgtaaaagcacttaatccacttgttgacaaaacttgaccataagcacttgaatcatatctctccaaagc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4362780 |
cctcaagcaacctcttatttattcttagatatgtaaaagcacttaatccacttgttgacaaaacttgaccataagcacttgaatcatatctctccaaagc |
4362879 |
T |
|
| Q |
101 |
attctcaccagcaagttcaccacctgccatctttgttgccattctcacttgatttaccaatccttctggtgaacaatttgcatcacaaggttgttcatta |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4362880 |
attctcaccagcaagttcaccacctgcaatctttgttgccattctcacttgatttaccaatccttctggtgaacaatttgcatcacaaggttgttcatta |
4362979 |
T |
|
| Q |
201 |
tccttcatttccatgcatgtgaaatttagtataactccatgttttgcaagcatttgtgctattggtatataaccatcatgaaaccttgtgttatagtaac |
300 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4362980 |
tccttcatttccatgcatgtgaaattcaatataactccatgttttgctagcatttgtgctattggtatataaccatcatgaaactttgtgttatagtaac |
4363079 |
T |
|
| Q |
301 |
ctgcagttaattcagttgcatgtgatcttgcattgtaatgccaatgaattccagctattttggcagatagtttcactccacttgtttggaatatgctttt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4363080 |
ctgcagttaattcagttgcatgtgatcttgcattgtaatgccaatgaattccagctattttggcagatagtttcactccacttgtttggaatatgctttt |
4363179 |
T |
|
| Q |
401 |
agctgatacaagaattttctcaccatgttcaacaagtttgcttgagtaccaatcaaggaagaaatctccatattctgtg |
479 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4363180 |
agctgatacaagaattttctcaccatgttcaacaagcttgcttgagtaccaatcaaggaagaaatctccatattctgtg |
4363258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 479
Target Start/End: Original strand, 4370583 - 4371061
Alignment:
| Q |
1 |
cctcaagcaacctcttatttattcttagatatgtaaaagcacttaatccacttgttgacaaaacttgaccataagcacttgaatcatatctctccaaagc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
4370583 |
cctcaagcaacctcttatttattcttaaataagtaaaagcacttaatccacttgtagacaaaacttgaccataagcacttgaatcatatctctccaatgc |
4370682 |
T |
|
| Q |
101 |
attctcaccagcaagttcaccacctgccatctttgttgccattctcacttgatttaccaatccttctggtgaacaatttgcatcacaaggttgttcatta |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| |||| | ||||||||||||| |
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| T |
4370683 |
attctcaccagcaagttcaccacctgcaatctttgttgccatcttcacttgattcaccaatccttctggtgaacaattagcatggccaggttgttcatta |
4370782 |
T |
|
| Q |
201 |
tccttcatttccatgcatgtgaaatttagtataactccatgttttgcaagcatttgtgctattggtatataaccatcatgaaaccttgtgttatagtaac |
300 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4370783 |
tccttcatttccatgcatgtgaaattcaatataactccatgttttgctagcatttgtgctattggtatataaccatcatgaaaccttgtgttatagtaac |
4370882 |
T |
|
| Q |
301 |
ctgcagttaattcagttgcatgtgatcttgcattgtaatgccaatgaattccagctattttggcagatagtttcactccacttgtttggaatatgctttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4370883 |
ctgcagttaattcagttgcatgtgatcttgcattgtaatgccaatgaattccagctattttggcagatagtttcactccacttgtttggaatatgctttt |
4370982 |
T |
|
| Q |
401 |
agctgatacaagaattttctcaccatgttcaacaagtttgcttgagtaccaatcaaggaagaaatctccatattctgtg |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4370983 |
agctgatacaagaattttctcaccatgttcaacaagcttgcttgagtaccaatcaaggaagaaatctccatattctgtg |
4371061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 412
Target Start/End: Complemental strand, 41044224 - 41043862
Alignment:
| Q |
50 |
acttgttgacaaaacttgaccataagcacttgaatcatatctctccaaagcattctcaccagcaagttcaccacctgccatctttgttgccattctcact |
149 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||||||||||||||||| ||||| || ||||||||||| | ||||| ||||||||| | | ||| |
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| T |
41044224 |
acttgttgacaaaacttgagcatatccacctgaatcatatctctccagtgcattttccccagcaagttctatattagccatttttgttgccttcttgact |
41044125 |
T |
|
| Q |
150 |
tgatttaccaatccttctggtgaacaatttgcatcacaaggttgttcattatccttcatttccatgcatgtgaaatttagtataactccatgttttgcaa |
249 |
Q |
| |
|
|| | || || |||||||| ||||| || |||| | ||||||||| | || |||||||||||||| |||||||| | | ||| |||| ||||||| |
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|
| T |
41044124 |
tggtgaactaacccttctggcgaacagttagcatgtccaggttgttctctgtctttcatttccatgcaggtgaaattgaagacaacgtcatggtttgcaa |
41044025 |
T |
|
| Q |
250 |
gcatttgtgctattggtatataaccatcatgaaaccttgtgttatagtaacctgcagttaattcagttgcatgtgatcttgcattgtaatgccaatgaat |
349 |
Q |
| |
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||||| || ||||| | ||| ||||||| | || |||||||||||||| ||||||| ||||| ||| || || |||| ||||||||||||| || |
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|
| T |
41044024 |
acattttggcaattggaagatacccatcattatgtctagtgttatagtaaccagcagttagttcagctgcgtgcgaccttgatctgtaatgccaatggat |
41043925 |
T |
|
| Q |
350 |
tccagctattttggcagatagtttcactccacttgtttggaatatgcttttagctgatacaag |
412 |
Q |
| |
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||| || | ||| ||||||||||||| ||| ||| |||||||| ||| ||||||||||| |
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|
| T |
41043924 |
tcccgcaactttaccagatagtttcacaccagatgtctggaatatttctttggctgatacaag |
41043862 |
T |
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