View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1965_low_5 (Length: 471)
Name: NF1965_low_5
Description: NF1965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1965_low_5 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 26817768 - 26817315
Alignment:
| Q |
1 |
taacaataatgtcaatatttatagggactgctggtgtgtggagaatttcagcattgaatgaagctggtgggtggaaagataggaccactgttgaagatat |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
26817768 |
taacaataatgtcaaaatttatagggactgctggtgtgtggagaatttcagcattgaatgaagctggtgggtggaaagataggaccacagttgaagatat |
26817669 |
T |
|
| Q |
101 |
ggacctggctgtacgtgctagtctggaaggatggaaattcttatacctttgtaatttagaggttccaatctcaaaactctcgtctctttacatgttatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26817668 |
ggacctggctgtacgtgctagtctggaaggatggaaattcttatacctttgtaatttagaggttccaatctcaaaactctcgtctctttacatgttatgt |
26817569 |
T |
|
| Q |
201 |
taacaaatttttaatgttacattgattttatttgaatataagttgttcttgatatatgatctataggttaaaaatgaattgccaagtacatttaaggctt |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26817568 |
taacaaaattttaatgttacattgattttatttgaatataagttgttcttgatatatgatctataggttaaaaatgaattgccaagtacatttaaggctt |
26817469 |
T |
|
| Q |
301 |
ataggtaccaacaacatcgatggtcatgtgggccagccaatctctttagaaaaatggctatggagattcttagaagcaaggtaattattttaatccttgt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26817468 |
ataggtaccaacaacatcgatggtcatgtgggccagccaatctctttagaaaaatggctatggagattcttagaagcaaggtaattattttaatccttgt |
26817369 |
T |
|
| Q |
401 |
tgaattcactagttgattataatttaacttatgatctaaattcatgcatgtcct |
454 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26817368 |
tgaattcactagtcgattataatttaacttatgatctaaattcatgcatgtcct |
26817315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 21 - 384
Target Start/End: Complemental strand, 26791041 - 26790679
Alignment:
| Q |
21 |
atagggactgctggtgtgtggagaatttcagcattgaatgaagctggtgggtggaaagataggaccactgttgaagatatggacctggctgtacgtgcta |
120 |
Q |
| |
|
||||||||||||||||| ||||||||||| || ||||||||||| ||||| ||||||||||| ||||| || ||||| ||||| ||||||||||||||| |
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|
| T |
26791041 |
atagggactgctggtgtatggagaatttcggcgttgaatgaagcgggtggatggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgcta |
26790942 |
T |
|
| Q |
121 |
gtctggaaggatggaaattcttatacctttgtaatttagaggttccaatctcaaaac------tctcgtctctttacatgtt---atgttaacaaatttt |
211 |
Q |
| |
|
|||| |||||||||||||| |||| || | |||||| |||||||| | || || ||| |||||||| |||| |||||| |||| | | |
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|
| T |
26790941 |
gtctcaaaggatggaaattcctatatctctccaatttacaggttccattttcttaatccaatttctaaactctttacttgttgttatgttaccaaaatat |
26790842 |
T |
|
| Q |
212 |
taatgttacattgattttatttgaatataagttgttcttgatatatgatctataggttaaaaatgaattgccaagtacatttaaggcttataggtaccaa |
311 |
Q |
| |
|
| |||||||||| |||||||| |||||| | |||||||| |||| ||||||||| ||||| |||||||| || ||||| |||||||||||| |
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|
| T |
26790841 |
ga-tgttacattggttttattttaatatatggtgttcttggtata---------ggttaaaaacgaattaccaagtactttaaaggcctataggtaccaa |
26790752 |
T |
|
| Q |
312 |
caacatcgatggtcatgtgggccagccaatctctttagaaaaatggctatggagattcttagaagcaaggtaa |
384 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || |||||||| | |||||||||| | | ||||||||||| |
|
|
| T |
26790751 |
caacatcgatggtcatgtgggccagcaaatcttttcagaaaaattgttatggagattgtcacaagcaaggtaa |
26790679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 21 - 148
Target Start/End: Complemental strand, 26784715 - 26784588
Alignment:
| Q |
21 |
atagggactgctggtgtgtggagaatttcagcattgaatgaagctggtgggtggaaagataggaccactgttgaagatatggacctggctgtacgtgcta |
120 |
Q |
| |
|
||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||| || | |||||||| | |
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|
| T |
26784715 |
atagggactgcgggtgtgtggagaatttcggcgttgaatgaagctggtgggtggaaagataggaccacagttgaagatatggatctatcagtacgtgcaa |
26784616 |
T |
|
| Q |
121 |
gtctggaaggatggaaattcttatacct |
148 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
|
|
| T |
26784615 |
gtctcgaaggatggaaattcttatacct |
26784588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 26831417 - 26831292
Alignment:
| Q |
23 |
agggactgctggtgtgtggagaatttcagcattgaatgaagctggtgggtggaaagataggaccactgttgaagatatggacctggctgtacgtgctagt |
122 |
Q |
| |
|
||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||| || ||||| ||||| ||||||||||||| ||| |
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|
| T |
26831417 |
agggactgcgggtgtatggagaatttcggcgttgaatgaagctggtgggtggaaagatagaaccaccgtcgaagacatggatttggctgtacgtgccagt |
26831318 |
T |
|
| Q |
123 |
ctggaaggatggaaattcttatacct |
148 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
26831317 |
ctcaaaggatggaaattcttatacct |
26831292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 26831154 - 26831046
Alignment:
| Q |
260 |
tctataggttaaaaatgaattgccaagtacatttaaggcttataggtaccaacaacatcgatggtcatgtgggccagccaatctctttagaaaaatggct |
359 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| || || | |||||||||||||||||||||||||||||| ||||||||||| || |||||||||| |
|
|
| T |
26831154 |
tctataggttaaaaacgaattgccaagtacattaaaagcctttaggtaccaacaacatcgatggtcatgtggaccagccaatcttttcagaaaaatggta |
26831055 |
T |
|
| Q |
360 |
atggagatt |
368 |
Q |
| |
|
||||||||| |
|
|
| T |
26831054 |
atggagatt |
26831046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 260 - 386
Target Start/End: Complemental strand, 26784433 - 26784307
Alignment:
| Q |
260 |
tctataggttaaaaatgaattgccaagtacatttaaggcttataggtaccaacaacatcgatggtcatgtgggccagccaatctctttagaaaaatggct |
359 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || || || ||||| |||||||||||||||||||||||||| || |||||||| || || |||||| | |
|
|
| T |
26784433 |
tctataggttaaaaatgaattgcccagtactttaaatgcctatagataccaacaacatcgatggtcatgtggaccggccaatcttttcaggaaaatgatt |
26784334 |
T |
|
| Q |
360 |
atggagattcttagaagcaaggtaatt |
386 |
Q |
| |
|
||||||||||| | || |||||||||| |
|
|
| T |
26784333 |
atggagattctcacaaacaaggtaatt |
26784307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 41546852 - 41546961
Alignment:
| Q |
30 |
gctggtgtgtggagaatttcagcattgaatgaagctggtgggtggaaagataggaccactgttgaagatatggacctggctgtacgtgctagtctggaag |
129 |
Q |
| |
|
|||||||| ||||||||||||||| | |||||||||||||| ||||| || | || || || |||||||||||||| || ||| | || ||||| ||| |
|
|
| T |
41546852 |
gctggtgtttggagaatttcagcactaaatgaagctggtggatggaaggaccgcacaacagtggaagatatggacctagcagtaagagccagtctcaaag |
41546951 |
T |
|
| Q |
130 |
gatggaaatt |
139 |
Q |
| |
|
|||||||||| |
|
|
| T |
41546952 |
gatggaaatt |
41546961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 41919711 - 41919836
Alignment:
| Q |
21 |
atagggactgctggtgtgtggagaatttcagcattgaatgaagctggtgggtggaaagataggaccactgttgaagatatggacctggctgtacgtgcta |
120 |
Q |
| |
|
||||||||||| || |||||||||||||| || |||| || |||||||| ||||| ||||||||||| ||||||||||||||| ||||||| | |||| |
|
|
| T |
41919711 |
atagggactgcgggagtgtggagaatttcggcgctgaacgaggctggtggatggaaggataggaccacagttgaagatatggacttggctgttagagcta |
41919810 |
T |
|
| Q |
121 |
gtctggaaggatggaaattcttatac |
146 |
Q |
| |
|
|||| |||| ||||| ||||||||| |
|
|
| T |
41919811 |
gtctcaaagggtggaagttcttatac |
41919836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 384
Target Start/End: Original strand, 41920184 - 41920303
Alignment:
| Q |
265 |
aggttaaaaatgaattgccaagtacatttaaggcttataggtaccaacaacatcgatggtcatgtgggccagccaatctctttagaaaaatggctatgga |
364 |
Q |
| |
|
|||||||||||||| |||| ||||| || ||||| || | |||||||| ||||| ||||| ||||| ||||||||||| || ||||||||| |||| |
|
|
| T |
41920184 |
aggttaaaaatgaactgccgagtactttcaaggcctaccgttaccaacagcatcgttggtcttgtggaccagccaatcttttccgaaaaatggtcttgga |
41920283 |
T |
|
| Q |
365 |
gattcttagaagcaaggtaa |
384 |
Q |
| |
|
|||| |||||| |||||||| |
|
|
| T |
41920284 |
gattattagaaacaaggtaa |
41920303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 149
Target Start/End: Complemental strand, 20237144 - 20237052
Alignment:
| Q |
57 |
aatgaagctggtgggtggaaagataggaccactgttgaagatatggacctggctgtacgtgctagtctggaaggatggaaattcttatacctt |
149 |
Q |
| |
|
|||||||| || || ||||||||||| || || ||||||||||||||||| ||||| || || ||||| ||||||||||| || |||||| |
|
|
| T |
20237144 |
aatgaagcaggaggatggaaagatagaacaacagttgaagatatggacctcgctgttcgagcaagtcttaggggatggaaatttttgtacctt |
20237052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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