View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1965_low_8 (Length: 409)
Name: NF1965_low_8
Description: NF1965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1965_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 4910877 - 4910470
Alignment:
| Q |
1 |
ttcttactttattatttatacacctcgaacataacactagattttgactggtcccaatagaacacaagttcatgaaagtaaaatatacatgtaattaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4910877 |
ttcttactttattatttatacacctcgaacataacactagagtttgactggtcccaatagaacacaagttcatgaaagtaaaatatacatgtaattaatt |
4910778 |
T |
|
| Q |
101 |
aaacatacacatcaatctcaatctatattctgtggggaatgagagatcctaaccaaattattatcacgaacattgcaagatctcttacatgagaaaaaag |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4910777 |
aaacatacacatcaatctcaatctatgttctgtggggaatgagagatcctaaccaaattattatcacgaacattgcaagatctcttacatgagaaaaaag |
4910678 |
T |
|
| Q |
201 |
acatatttttcactaaccttgattcacaaaaactactactaccaggtctactcatctttttatccctcttaccacttttctgacttttggtacactcttt |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4910677 |
acatgtttttcactaaccttgattcacaaaaactactactaccaggtctactcatctttttatccctcttaccacttttctgacttttggtacactcttt |
4910578 |
T |
|
| Q |
301 |
gtaagctgctaagaaaggatcatcatcttgaacccaaatacccttcttggaagaagttctataataaggaggttgaaaagcacaaggaggaagtggaatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4910577 |
gtaagctgctaagaaaggatcatcatcttgaacccaaatacccttcttggaagaagttctataataaggaggttgaaaagcacaaggaggaagtggaatt |
4910478 |
T |
|
| Q |
401 |
tgaaaatc |
408 |
Q |
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|||||||| |
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| T |
4910477 |
tgaaaatc |
4910470 |
T |
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