View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19660_high_1 (Length: 452)
Name: NF19660_high_1
Description: NF19660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19660_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Complemental strand, 51616933 - 51616508
Alignment:
| Q |
11 |
cacagacaataaaccagtcaaaattgaattactgctgaatcaaatgcaccaacaaaatatttgtttcaagttttaacccaaggtgaaaacatcaaaaata |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51616933 |
cacagacaataaaccagtcaaaattgaattactgctgaatcaaatgcaccaacaaaatatttgtttcaagttttaacccaaggtgaaaacatcaaaaata |
51616834 |
T |
|
| Q |
111 |
gtaactataccatgtactatgtgtaagatctttattgttttagtatatttaagacttgaatacaacatgcacctaaccttatcttaccttaaatactgaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51616833 |
gtaactataccatgtactatgtgtaagatctttattgttttagtatatttaagacttgaatacaacatgcacctaaccttatcttaccttaaatactgaa |
51616734 |
T |
|
| Q |
211 |
atagctaaccagaggacaagttcacagagggaataccatggaaatgacaaactgccagaaaactcaagatactcttccaaccaaatcaaacacggtagtg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51616733 |
atagctaaccagaggacaagttcacagagggaataccatggaaatgacaaactgccagaaaactcaagatactcttccaaccaaatcaaacacggtagtg |
51616634 |
T |
|
| Q |
311 |
tgaacgtggaggttgaaaaacaaccaaatgaaccataatatagccaggtcacaatcacaaaagatcaataacacttcatnnnnnnnnnnntactagtggt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
51616633 |
tgaacgtggaggttgaaaaacaaccaaatgaaccataatatagccaggtcacaatcacaaaagatcaataacacttcat-aaaaaaaaaatactagtggt |
51616535 |
T |
|
| Q |
411 |
attaaagacaaagcagaatgatataac |
437 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
51616534 |
attaaagacaaagcagaatgatataac |
51616508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University