View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19660_low_2 (Length: 411)
Name: NF19660_low_2
Description: NF19660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19660_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 42309597 - 42309203
Alignment:
| Q |
1 |
tacatcattacatccatgttcagagagtcatattcatattcatattcatatctaaaatagataaaagaaggtaaatggaaatattagtaccctgaaacca |
100 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42309597 |
tacatcattacatccatgttcagaaa------ttcatattcatattcatatctaaaatagataaaagaaggtaaatggaaatattagtaccctgaaacca |
42309504 |
T |
|
| Q |
101 |
ctacattgaaaactttggctttttcacaaaataaaaagtctcctagttgggtcatgacatgatgttgatgatgatacttcttatctctaattgctggaat |
200 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42309503 |
ctacattgaacactttggttttttcacaaaataaaaagtctcctagttgggtcatga-----tgttgatgatgatacttcttatctctaattgctggaat |
42309409 |
T |
|
| Q |
201 |
ttgaagcattttgacttgaacctgatccaaggttaaggtcaagcatgttgtttggtgcattggtttttgagttaccagcaccatttgagagcttttgttt |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42309408 |
tggaagcattttgacttgaacctgatccaaggttaaggtcaagcatgttgtttggtgcattggtttttgagttaccagcaccatttgagagcttttgttt |
42309309 |
T |
|
| Q |
301 |
aagctgagacaaaagtgcttgattctcttgattcagaatttgagctttcttcctaagcctttcattctctttcattatgtgacagttttggtagtacaac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42309308 |
aagctgagacaaaagtgcttgattctcttgattcagaatttgagctttcttcctaagcctttcattctctttcattatgtgacagttttggtagtacaac |
42309209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 239 - 377
Target Start/End: Original strand, 10284371 - 10284509
Alignment:
| Q |
239 |
tcaagcatgttgtttggtgcattggtttttgagttaccagcaccatttgagagcttttgtttaagctgagacaaaagtgcttgattctcttgattcagaa |
338 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
10284371 |
tcaagcatgttgtttggagcattggttttggagttactagcaccatttgagaatttttgtttgagctgagatgcaagtgcttgattctctttgttcagaa |
10284470 |
T |
|
| Q |
339 |
tttgagctttcttcctaagcctttcattctctttcatta |
377 |
Q |
| |
|
| | | ||||||||| ||| ||||||| |||||||||| |
|
|
| T |
10284471 |
tctcatatttcttccttagcttttcattatctttcatta |
10284509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 271 - 403
Target Start/End: Complemental strand, 42312561 - 42312432
Alignment:
| Q |
271 |
gttaccagcaccatttgagagcttttgtttaagctgagacaaaagtgcttgattctcttgattcagaatttgagctttcttcctaagcctttcattctct |
370 |
Q |
| |
|
||||| ||||||| |||||| | | ||||| || |||||||||| |||||||| ||||||||| || |||| ||||| |||| | | ||||||||||| |
|
|
| T |
42312561 |
gttactagcaccaattgagaacatctgtttgagttgagacaaaaatgcttgat---cttgattcaaaagttgacctttcctccttaacatttcattctct |
42312465 |
T |
|
| Q |
371 |
ttcattatgtgacagttttggtagtacaactct |
403 |
Q |
| |
|
|| ||||||||||| |||| ||||||||||||| |
|
|
| T |
42312464 |
tttattatgtgacaatttttgtagtacaactct |
42312432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 10284286 - 10284352
Alignment:
| Q |
166 |
tgatgatgatacttcttatctctaattgctggaatttgaagcattttgacttgaacctgatccaagg |
232 |
Q |
| |
|
|||||||||| | || ||| | |||||| || ||||||||| |||||||||||||||||| |||||| |
|
|
| T |
10284286 |
tgatgatgatgcctcatatatgtaattgttgaaatttgaaggattttgacttgaacctgaaccaagg |
10284352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 228 - 403
Target Start/End: Original strand, 17171470 - 17171645
Alignment:
| Q |
228 |
caaggttaaggtcaagcatgttgtttggtgcattggtttttgagttaccagcaccatttgagagcttttgtttaagctgagacaaaagtgcttgattctc |
327 |
Q |
| |
|
|||||||||| |||||||||||| || | ||||||||||| ||||||| |||||||||||||| ||||||||| |||||| | ||||||| ||| ||||| |
|
|
| T |
17171470 |
caaggttaagatcaagcatgttgcttcgagcattggttttggagttactagcaccatttgagaacttttgtttgagctgatataaaagtgtttgtttctc |
17171569 |
T |
|
| Q |
328 |
ttgattcagaatttgagctttcttcctaagcctttcattctctttcattatgtgacagttttggtagtacaactct |
403 |
Q |
| |
|
|| | | |||| || ||||||| |||| | | |||||||||||||||||| | |||| |||| | |||||||||| |
|
|
| T |
17171570 |
ttcacttagaaattcagctttcctcctcaacttttcattctctttcattaagcgacaatttttcttgtacaactct |
17171645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 227 - 403
Target Start/End: Original strand, 17166686 - 17166862
Alignment:
| Q |
227 |
ccaaggttaaggtcaagcatgttgtttggtgcattggtttttgagttaccagcaccatttgagagcttttgtttaagctgagacaaaagtgcttgattct |
326 |
Q |
| |
|
||||||||||| |||| |||||||||||| |||| |||||| ||||||| |||||||||||||| || |||||| |||||||| ||||||| ||| |||| |
|
|
| T |
17166686 |
ccaaggttaagatcaatcatgttgtttggagcatcggttttggagttactagcaccatttgagatctgttgtttgagctgagataaaagtgtttgtttct |
17166785 |
T |
|
| Q |
327 |
cttgattcagaatttgagctttcttcctaagcctttcattctctttcattatgtgacagttttggtagtacaactct |
403 |
Q |
| |
|
||| | | |||| || | |||||||||| | | ||||||| |||||||||| | |||| |||| | |||||||||| |
|
|
| T |
17166786 |
cttcacttagaagttcaactttcttcctcaacttttcattttctttcattaagcgacaatttttcttgtacaactct |
17166862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 228 - 403
Target Start/End: Original strand, 17176278 - 17176453
Alignment:
| Q |
228 |
caaggttaaggtcaagcatgttgtttggtgcattggtttttgagttaccagcaccatttgagagcttttgtttaagctgagacaaaagtgcttgattctc |
327 |
Q |
| |
|
|||||||||| |||||||||||| || | ||||||||||| ||||||| ||||||| |||||| ||||||||| |||||| | ||||||| ||| ||||| |
|
|
| T |
17176278 |
caaggttaagatcaagcatgttgcttcgagcattggttttggagttactagcaccaattgagaacttttgtttgagctgatataaaagtgtttgtttctc |
17176377 |
T |
|
| Q |
328 |
ttgattcagaatttgagctttcttcctaagcctttcattctctttcattatgtgacagttttggtagtacaactct |
403 |
Q |
| |
|
|| | |||| || ||||||| |||| | | |||||||||||||||||| | ||||||||| | |||||||||| |
|
|
| T |
17176378 |
ttcacgtagaagttcagctttcctcctcaacttttcattctctttcattaagcgacagtttttcttgtacaactct |
17176453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University