View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19661_low_1 (Length: 484)
Name: NF19661_low_1
Description: NF19661
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19661_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 9 - 466
Target Start/End: Complemental strand, 2355478 - 2355006
Alignment:
| Q |
9 |
agcagagaattgaagaaaaactgaaggctgaggtgaggtcagctcattgattttacaataaaatttcatactatttagctgctactaatcacatatgaag |
108 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2355478 |
agcagagaattgaagaaaaactgaaagctgaggtgaggtcagctcattgattttacaataaaatttcatactatttagctgctactaatcacatatgaag |
2355379 |
T |
|
| Q |
109 |
tgaaactagcaaattgatgtttaaattttgttatggttttgaagaggaagcagttggtgcaaggaatgaacttttaccttaaagttgttacatcaatccc |
208 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2355378 |
tgaaactagcaaattgatgtttgaattttgttatggttttgaagaggaagcagttggtgcaaggaatgaacttttaccttaaagttgttacatcaatccc |
2355279 |
T |
|
| Q |
209 |
aggcattgacaatcacgatgcaaatgcggtaaatctctctactgcaaggcaactcttcaatttagttttatttttacgtgcctcctttcattattgatta |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
2355278 |
aggcattgacaatcacgatgcaaatgcggtaaatctctctactacaaggcaactcttcaatttagttttatttttacatgcctcctttcgttattgatta |
2355179 |
T |
|
| Q |
309 |
agctctgaattctagagtatagacatgtta---------------aactttcataagtagtttgtggataagcattccttttgtatatttccagataata |
393 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| |
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| T |
2355178 |
agctctgaattctagagtatagacatgttaaactcgctaaagtataactttcataagtagtttgtgcataagcattccatttgtttatttccagataata |
2355079 |
T |
|
| Q |
394 |
attgcattgatgtcaaagttttcatgctatgttaggcttgtgctattttcctactggctggggatagtcttta |
466 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
2355078 |
attgcattggtgtcaaagttttcatgctatgttagtcttgtgctattttcctactggctgggggtagtcttta |
2355006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 2222561 - 2222689
Alignment:
| Q |
9 |
agcagagaattgaagaaaaactgaaggctgaggtgaggtcagctcattgattttacaataaaatttcatactatttagctgctactaatcacatatgaag |
108 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2222561 |
agcagagaattgaagaaaaactgaaagctgaggtgaggtcagctcattgattttacaataaaatttcatactatttagctgctactaatcacatatgaag |
2222660 |
T |
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| Q |
109 |
tgaaactagcaaattgatgtttaaatttt |
137 |
Q |
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|||||||||||||||||||||| |||||| |
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| T |
2222661 |
tgaaactagcaaattgatgtttgaatttt |
2222689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 339 - 397
Target Start/End: Complemental strand, 38144781 - 38144723
Alignment:
| Q |
339 |
aactttcataagtagtttgtggataagcattccttttgtatatttccagataataattg |
397 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
38144781 |
aactttcataagtagtttgtgcataagcattcctttcgtatatttccagataataattg |
38144723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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