View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19662_high_1 (Length: 465)
Name: NF19662_high_1
Description: NF19662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19662_high_1 |
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| [»] scaffold0175 (2 HSPs) |
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Alignment Details
Target: scaffold0175 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 27923 - 27647
Alignment:
| Q |
18 |
ttactaacgaaagatgtcttctttccaatagtaaagagatattggggattggaattttgaagtttgtcctgttacaggctcatagctatagtatttactt |
117 |
Q |
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|||||||||||| ||| |||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
27923 |
ttactaacgaaatatgccttctttccaatagaaaagagatattagggattggaattttgaagttcgtcctgttacaggctcatagctatagtatttaatt |
27824 |
T |
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| Q |
118 |
ttacaaatgattcatgttaacacaaacaacctatagtcactactgttctattaagaatgaatgtttcaagaatgaatcacattatttannnnnnnncttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||| |||||||||||||||||| |||||| |||| |
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| T |
27823 |
ttacaaatgattcatgttaacacaaacaacctatagtcaccact-ttttattaagaatgaatatttcaagaatgaatcacactattta--ttttttcttg |
27727 |
T |
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| Q |
218 |
acaaaaatatactaattcttggcattttctgtcattatcaaaatccatggaatatttgatttcaaacaatgaacacatttca |
299 |
Q |
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|| ||||||||||||||||| ||||| ||| ||||||||||||||| ||||||| ||||||||||||| |||||||||| |
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| T |
27726 |
ac--aaatatactaattcttgacatttattgttgttatcaaaatccatgaaatattttatttcaaacaatgtacacatttca |
27647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0175; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 440
Target Start/End: Complemental strand, 27574 - 27528
Alignment:
| Q |
394 |
taagctaagatcataattacctaaatgtctcatatacttaccgctaa |
440 |
Q |
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|||| ||||||||||| ||||||||||||||| |||||||| ||||| |
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| T |
27574 |
taaggtaagatcataactacctaaatgtctcaaatacttactgctaa |
27528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 29276327 - 29276604
Alignment:
| Q |
18 |
ttactaacgaaagatgtcttctttccaatagtaaagagatattggggattggaattttgaagtttgtcctgttacaggctcatagctatagtatttactt |
117 |
Q |
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||||||| |||| ||| |||||| ||||||| |||||||| ||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
29276327 |
ttactaaagaaatatgccttctt-ccaatagaaaagagatgttggggattagaattttgaagtttgtcgtgttacatgctcatagctatagtatttactt |
29276425 |
T |
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| Q |
118 |
ttacaaatgattcatgttaacacaaacaacctatagtcactactgttctattaagaatgaatgtttcaagaatgaatcacattatttannnnnnnncttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29276426 |
ttacaaatgattcatgttaacacaaacaacctatagtcaccacttttctattaagaatgaatgtttcaagaatgaatcacattatttattttttg--ttg |
29276523 |
T |
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| Q |
218 |
acaaaaatatactaattcttggc-attttctgtcattatcaaaatccatggaatatttgatttcaaacaatgaacacatttca |
299 |
Q |
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| T |
29276524 |
ac--aaatatgctaattcttggctttttttttttgttatcaaaatccatggaatatttgatttcaaacaatgtacacatttca |
29276604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 29276664 - 29276727
Alignment:
| Q |
377 |
tgtcataactttaagtctaagctaagatcataattacctaaatgtctcatatacttaccgctaa |
440 |
Q |
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| T |
29276664 |
tgtcattactttaagtttaagctaagatcataattacctaaatgtctcaaatacttactgctaa |
29276727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 355
Target Start/End: Original strand, 29276673 - 29276706
Alignment:
| Q |
322 |
tttaagtttaagctaagatcataattatctaaat |
355 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
29276673 |
tttaagtttaagctaagatcataattacctaaat |
29276706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 9e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 40 - 299
Target Start/End: Complemental strand, 55858252 - 55857989
Alignment:
| Q |
40 |
ttccaatagtaaagagatattggggattggaattttgaagtttgtcctgttacaggctcatagctatagtatttacttttacaaatgattcatgttaaca |
139 |
Q |
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||||||||| |||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55858252 |
ttccaatagaaaagagatatcggggattagaattttgaagtttgtcgtgttacatgctcatagctatagtatttacttttacaaatgattcatgttaaca |
55858153 |
T |
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| Q |
140 |
caaacaacctatagtcactactgttctattaagaatgaatgtttcaagaatgaatcacattatttannnnnnnncttgacaaaaatatactaattcttgg |
239 |
Q |
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|||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||| |
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| T |
55858152 |
caaacaacctatagtcaccatttttctattaagaatgaatgtttcaagaatgaatcacattatttattttttg--ttgac--aaatatgctaattcttgg |
55858057 |
T |
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| Q |
240 |
catt--------ttctgtcattatcaaaatccatggaatatttgatttcaaacaatgaacacatttca |
299 |
Q |
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| || || | | ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
55858056 |
cttttatttttatttttttgttatcaaaatccatggaatatttgatttcaaacaatgtacacatttca |
55857989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 374 - 440
Target Start/End: Complemental strand, 55857932 - 55857866
Alignment:
| Q |
374 |
ggctgtcataactttaagtctaagctaagatcataattacctaaatgtctcatatacttaccgctaa |
440 |
Q |
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||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
55857932 |
ggctgtcattactttaagtttaagctaagatcataattacctaaatgtctcaaatacttactgctaa |
55857866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 355
Target Start/End: Complemental strand, 55857920 - 55857887
Alignment:
| Q |
322 |
tttaagtttaagctaagatcataattatctaaat |
355 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
55857920 |
tttaagtttaagctaagatcataattacctaaat |
55857887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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