View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19662_high_2 (Length: 425)
Name: NF19662_high_2
Description: NF19662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19662_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 156 - 407
Target Start/End: Original strand, 33263418 - 33263671
Alignment:
| Q |
156 |
tatgattctcttcatttggtttaattagtgatgatggaaagacatcaatgtcacaactatggtaatatgttggagattataagattagatgaagaatgat |
255 |
Q |
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| T |
33263418 |
tatgattctcttcatttggtttaattagtgatgatggaaagacatcaatgtcacaactatggtaatatgttggagattataagattagatgaagaatgat |
33263517 |
T |
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| Q |
256 |
tgaaatctttgttttgaaaaatatactc--tatgaagaaaatgtttgtgtgatattcttacatagatgagagttatatcgtttagactatttaactatgg |
353 |
Q |
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| T |
33263518 |
tgaaatctttgttttgaaaaatatactctttatgaagaaaatgtttgtgtgatattcttacatagatgagagttatatcgtttagactatttaactatgg |
33263617 |
T |
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| Q |
354 |
atattgagttatgtnnnnnnnnnctataaatattgagtctttttctagtcatat |
407 |
Q |
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| T |
33263618 |
atattgagttatgtaaaaaaaaactataaatattgagtctttttctagtcatat |
33263671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 33263186 - 33263345
Alignment:
| Q |
1 |
acatgatgtttgcctaccaaaccctttccaagtttatgctaccaaaccctctcttacaccgttcgttttgtattgagaaatgtcacactttattacatgt |
100 |
Q |
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| T |
33263186 |
acatgatgtttgcctaccaaaccctttccaagtttatgctaccaaaccctctcttacaccgttcgttttgtattgagaaatgtcacactttattacatgg |
33263285 |
T |
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| Q |
101 |
atttaatttatatatattgatagtgttcataattacatggatttaatttggattatatga |
160 |
Q |
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| T |
33263286 |
atttaatttatatatattgatagtgttcataattacatggatttaatttggattatatga |
33263345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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