View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19662_high_3 (Length: 379)
Name: NF19662_high_3
Description: NF19662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19662_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 49192199 - 49191841
Alignment:
| Q |
1 |
ttgtcccgtaacaaatttggacttcactcaatgacctttcttatcatacaagtctgttatctgctgaaaattgaacatcaaacaacctctgtctagcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49192199 |
ttgtcccgtaacaaatttggacttcactcaatgacctttcttatcatacaagtctgttctctgctgaaaattgaacatcaaacaacctctgtctagcctt |
49192100 |
T |
|
| Q |
101 |
acttgcctgcattagtaaaaccacacaattgagattaataaataattgcctaaaaggattctactgctacataatcatcgaacaaatttacacttcactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49192099 |
acttgcctgcattagtaaaaccacacaattgagattaataaataattgcctaaaaggattctactgctacataatcatcgaacaaatttacacttcactc |
49192000 |
T |
|
| Q |
201 |
gttgaaattaaaattgtagtcaatttagtcctccaatttaccagataacaatttagtcttataaaataaacaacttcaattaatttagtcctcnnnnnnn |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49191999 |
gttgaaattaaaactgtagtcaatttagtcctccaatttaccagataacaatttagtcttataaaataaacaacttcaattaatttagtcctctttcttt |
49191900 |
T |
|
| Q |
301 |
ccttcaaatttagcaccacggttttaagtgttatattgtgtatcttgatgcatgcaaca |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49191899 |
ccttcaaatttagcaccacggttttaagtgttatattgtgtatcttgatgcatgcaaca |
49191841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University