View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19662_high_4 (Length: 376)
Name: NF19662_high_4
Description: NF19662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19662_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 10 - 358
Target Start/End: Complemental strand, 44093669 - 44093316
Alignment:
| Q |
10 |
attattctagaatgaaaattatgtgttagattacatgggatgannnnnnnagcaccaagttggttgccattttatatgttgcttttatcctgggtgtatg |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44093669 |
attattctagaatgaaaattatgtgttagattacatgggatgatttttttagcaccaagttggttgccattttatatgttgcttttatcctgggtgtatg |
44093570 |
T |
|
| Q |
110 |
tatctcctgattctgaagtctttttacaaatttggtgtctgatcaacatttctcttctgcagttt-----gtaattatgccaatggacaatggtagatta |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44093569 |
tatctcctgattctgaagtctttttacaaatttggtgtctgatcaacatttctcttctgcagtttaatttgtaattatgccaatggacaatggtagatta |
44093470 |
T |
|
| Q |
205 |
actactgcggacaaaaagagaccatgtattctgggtttggttgtaaacaatggttatccccaatgtggccatgtagacggacaaaacgagcagatttcac |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44093469 |
actactgcggacaaaaagagaccatgtattctgggtttggctgtaaacaatggttatccccaatgtggccatgtagacggacaaaacgagcagatttcac |
44093370 |
T |
|
| Q |
305 |
atttgaaggataccgctggcagccagaaaattgtgatgtgccagagtttgtttg |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44093369 |
atttgaaggataccgctggcagccagaaaattgtgatgtgccagagtttgtttg |
44093316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 231 - 354
Target Start/End: Complemental strand, 39279203 - 39279080
Alignment:
| Q |
231 |
tattctgggtttggttgtaaacaatggttatccccaatgtggccatgtagacggacaaaacgagcagatttcacatttgaaggataccgctggcagccag |
330 |
Q |
| |
|
|||||||| || || ||||| || |||||||| |||||||| |||||||| |||| ||||| || |||| ||||||| |||||||||||||||||| |
|
|
| T |
39279203 |
tattctggtttcggctgtaagcagtggttatcatcaatgtggtcatgtagaatgacacaacgaccaaatttttcatttgagggataccgctggcagccaa |
39279104 |
T |
|
| Q |
331 |
aaaattgtgatgtgccagagtttg |
354 |
Q |
| |
|
| ||||||||| ||| |||||||| |
|
|
| T |
39279103 |
agaattgtgatatgcaagagtttg |
39279080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University