View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19662_high_5 (Length: 372)
Name: NF19662_high_5
Description: NF19662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19662_high_5 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 6358533 - 6358924
Alignment:
| Q |
1 |
accatttgtgacgtcttattatcccatttctttgttatttttctaatcatgattttatcatatagctgcatgc-ttgcccaattcagtgttggcttttga |
99 |
Q |
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| T |
6358533 |
accatttgtgacgtcttattatcccatttctttgttatttttctaatcatgattttatcatatagctgcatgctttgcccaattcagtgttggcttttga |
6358632 |
T |
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| Q |
100 |
gggaaagatagcatcagtaggtgatttgtagcat-----caaaggaactgaggtatgtgttt--------tattttttatctcgtctaagtagaagttac |
186 |
Q |
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| T |
6358633 |
gggaaagatagcatcagtaggtgatttgcagcatgtacccaaaggaactgaggtatgtgttttttttttattttttttatctcgtctaagtagaagttac |
6358732 |
T |
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| Q |
187 |
catttgcaataataagttcacttatagagcaagaaatgtcattcaaagattatttatgcatactcagcaaaacttggattcgagacc------tttgnnn |
280 |
Q |
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| T |
6358733 |
catttgcaataataagttcacttatagagcaagaaatgtcattcaaagattatttatgcatactcagcaaaacttggattcgagaccttttttttttttt |
6358832 |
T |
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| Q |
281 |
nnnnnnnnnncttgatctgtctaaactgaagatggaaaatcattccaatgccaagaatgtgggttagttaggtacaaggaacagataaagca |
372 |
Q |
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| T |
6358833 |
tttttttcttcttgatctgtctaaactgaagatggaaaatcattccaatgccaagaatgtgggttagttaggtacaaggaatagataaagca |
6358924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 309 - 372
Target Start/End: Complemental strand, 32857631 - 32857568
Alignment:
| Q |
309 |
aagatggaaaatcattccaatgccaagaatgtgggttagttaggtacaaggaacagataaagca |
372 |
Q |
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| T |
32857631 |
aagatggaaaagcatttcaatgccaagaatgtgggttagttagagacaaggaagagataaagca |
32857568 |
T |
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