View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19662_high_6 (Length: 277)
Name: NF19662_high_6
Description: NF19662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19662_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 68 - 261
Target Start/End: Original strand, 33431720 - 33431921
Alignment:
| Q |
68 |
ctcaagacaagtcaagaaacggtagaaattaaaattattaacacatggttggaataattgagagtattgagttaaaaatataa--cccgtattagtaatt |
165 |
Q |
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| T |
33431720 |
ctcaagacaagtcaagaaacggtagaaattaaaattattaacacatggttggaataatt--gagtattgagttaaaaatataactcccgtattagtaatt |
33431817 |
T |
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| Q |
166 |
tcttcgtt--------tgaatgattccaaccatgtgttaataatgtcagactctcaaaatgtctctaatattttttatatgatttcaatcatttgattgc |
257 |
Q |
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| T |
33431818 |
ttttcatttcagactctcaattattccaaccatatgttaataatttcagactctcaaaatgtctctaatattttttatatgatttcaatcattcgattgc |
33431917 |
T |
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| Q |
258 |
aggt |
261 |
Q |
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|||| |
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| T |
33431918 |
aggt |
33431921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 33431685 - 33431726
Alignment:
| Q |
12 |
agagaccaagaaacggcagaaattaagaaagacaactcaaga |
53 |
Q |
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| T |
33431685 |
agagaccaagaaacgacagaaattaagaaagacaactcaaga |
33431726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 33431863 - 33431830
Alignment:
| Q |
99 |
aaattattaacacatggttggaataattgagagt |
132 |
Q |
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| T |
33431863 |
aaattattaacatatggttggaataattgagagt |
33431830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 261
Target Start/End: Complemental strand, 40174750 - 40174712
Alignment:
| Q |
223 |
taatattttttatatgatttcaatcatttgattgcaggt |
261 |
Q |
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| T |
40174750 |
taatattttttatatgatttcaaccattcgattgcaggt |
40174712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 10257375 - 10257335
Alignment:
| Q |
221 |
tctaatattttttatatgatttcaatcatttgattgcaggt |
261 |
Q |
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| T |
10257375 |
tctaatattttttatataatttcaaccgtttgattgcaggt |
10257335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 6139126 - 6139166
Alignment:
| Q |
221 |
tctaatattttttatatgatttcaatcatttgattgcaggt |
261 |
Q |
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| T |
6139126 |
tctaatattttttatataatttcaaccgtttgattgcaggt |
6139166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 50531743 - 50531703
Alignment:
| Q |
221 |
tctaatattttttatatgatttcaatcatttgattgcaggt |
261 |
Q |
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||||||||||||||||| ||||||| | ||||||||||||| |
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| T |
50531743 |
tctaatattttttatataatttcaaccgtttgattgcaggt |
50531703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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