View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19663_low_2 (Length: 467)
Name: NF19663_low_2
Description: NF19663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19663_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 13 - 451
Target Start/End: Complemental strand, 45305523 - 45305089
Alignment:
| Q |
13 |
aatatttctatatctaacaactactcccacttttccatttcaatccccttcatttattatatgtgttttttaacacagtgtttatagctagctaagtaac |
112 |
Q |
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| T |
45305523 |
aatatttctatatctaacaactactcccacttttccatttcaatccccttcatttattatatgtgttttttaacacagtgtttatagctagctaagtaac |
45305424 |
T |
|
| Q |
113 |
ttcattccttctactatttataataattagccttttagtgagaaaagccctagttgacaacatgtggatggtgggttacaatgaaggtggtgagttcaac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45305423 |
ttcattccttctactatttataataattagccttttagtgagaaaagccctagttgacaacatgtggatggtgggttacaatgaaggtggtgagttcaac |
45305324 |
T |
|
| Q |
213 |
atggctgattatccattcagtggaaggaaactaaggcctctcattccaagaccagtcccagtccctactacttctcctaacaacacttcaactataactc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45305323 |
atggctgattatccattcagtggaaggaaactaaggcctctcattccaagaccagtcccagtccctactacttctcctaacaacacttcaactataactc |
45305224 |
T |
|
| Q |
313 |
cttccttaaaccgcattcatggtggcaatgatttattttcacaatatcatcacaatctgcagcagcaaggtatatactcttttctcttcttatttacaat |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
45305223 |
cttccttaaaccgcattcatggtggcaatgatttattttcacagtatcatcataatctgcagcagcaaggtatatactcttttctcttcttatttacact |
45305124 |
T |
|
| Q |
413 |
tactatatgtatgtatgtttaaactaaaagtgtcatgat |
451 |
Q |
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| T |
45305123 |
tactatatgt----atgtttaaactaaaagtgtcatgat |
45305089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 83 - 451
Target Start/End: Complemental strand, 40005490 - 40005123
Alignment:
| Q |
83 |
taacacagtgtttatagctagctaagtaacttcattccttctactatttataataattagccttttagtgagaaaagccctagttgacaacatgtggatg |
182 |
Q |
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|||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40005490 |
taacacagtgtttatagcta----agtaacttcattcgttctactatttataat---tagccttttagtgagaaaaggcctagttgacaacatgtggatg |
40005398 |
T |
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| Q |
183 |
gtgggttacaatgaaggtggtgagttcaacatggctgattatccattcagtggaaggaaactaaggcctctcattccaagaccagtccca------gtcc |
276 |
Q |
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| T |
40005397 |
gtgggttacagtgaaggtggtgagttcaacatggctgattatccattatgtggaaggaaactaaggcctctcatgtcaagaccagtcccaatcccagtcc |
40005298 |
T |
|
| Q |
277 |
ctactacttctcctaacaacacttcaactataactccttccttaaaccgcattcatggtggcaatgatttattttcacaatatcatcacaatctgcagca |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40005297 |
ctactacttctcctaacaacacttcaactataactccttccttaaaccgcattcatggtggcaatgatttattttcacaatatcatcacaatctgcagca |
40005198 |
T |
|
| Q |
377 |
gcaaggtatatactcttttctcttcttatttacaattactatatgtatgtatgtttaaactaaaagtgtcatgat |
451 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||| |
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| T |
40005197 |
gcaaggtatatactcttttctcttcttatttacacttaccatatgtatgtatgtgtaaactaaaagtgtcatgat |
40005123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 83 - 451
Target Start/End: Original strand, 40220062 - 40220423
Alignment:
| Q |
83 |
taacacagtgtttatagctagctaagtaacttcattccttctactatttataataattagccttttagtgagaaaagccctagttgacaacatgtggatg |
182 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40220062 |
taacacagtgtttatagcta----agtaacttcattcgttctactatttataa---ttagccttttagtgagaaaaggcctagttgacaacatgtggatg |
40220154 |
T |
|
| Q |
183 |
gtgggttacaatgaaggtggtgagttcaacatggctgattatccattcagtggaaggaaactaaggcctctcattccaagaccagtcccagtccctacta |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
40220155 |
gtgggttacaatgaaggtggtgagttcaacatggctgattatccattctgtggaaggaaactaaggcctctcatgccaagaccagtcctagtccctacta |
40220254 |
T |
|
| Q |
283 |
cttctcctaacaacacttcaactataactccttccttaaaccgcattcatggtggcaatgatttattttcacaatatcatcacaatctgcagcagcaagg |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40220255 |
cttctcctaacaacacttcaactataactccttccttaaaccgcattcatggtggcaatgatttattttcacaatatcatcacaatctgcggcagcaagg |
40220354 |
T |
|
| Q |
383 |
tatatactcttttctcttcttatttacaattactatatgtatgtatgtttaaactaaaagtgtcatgat |
451 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
40220355 |
tatatactcttttctcttcttatttacacttactatatgtatgtatgtgtaaactaaaagtgtcatgat |
40220423 |
T |
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