View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19663_low_5 (Length: 238)
Name: NF19663_low_5
Description: NF19663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19663_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 53174543 - 53174755
Alignment:
| Q |
18 |
tgaaggttataagaacctgtggttcaaaatcttttgtcaataaaatgtttgatgccttgatatctctatggattattctcctcttgcaacctttgtgcaa |
117 |
Q |
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| T |
53174543 |
tgaaggttataagaacctgtggttcaaaatcttttgtcaataaaatgtttgatgccttgatatctctatggattattctcctcttgcaacctttgtgcaa |
53174642 |
T |
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| Q |
118 |
gtagtgaagtccacgcgctgtcccaacaactattttatgtcttgttttccaatctaaaggagccaacttttcatctacaatataacaagattttcatata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
53174643 |
gtagtgaagtccacgcgctgtcccaacaactattttatgtcttgttttccaatctaaaggagccaactgttcatctacaatataacaagattttcatata |
53174742 |
T |
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| Q |
218 |
ctattaacaaccc |
230 |
Q |
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| T |
53174743 |
ctattaacaaccc |
53174755 |
T |
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