View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19664_high_8 (Length: 489)
Name: NF19664_high_8
Description: NF19664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19664_high_8 |
 | |
|
| [»] scaffold0210 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Original strand, 39574203 - 39574664
Alignment:
| Q |
19 |
tcttgtcctcctcgtctcattaagaaaagcttagtttcattgaaaataaagatcaaaatctttcgacaagaagaaaacaaactaacattaaattgttatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39574203 |
tcttgtcctcctcgtctcattaagaaaagcttaatttcattgaaaataaagatcaaaatctttcgacaagaagaaaacaaactaacattaaattgttatg |
39574302 |
T |
|
| Q |
119 |
aattttagctctttttgtttacctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgtt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39574303 |
aattttagctctttttgtttacctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccagtgtccactatgtt |
39574402 |
T |
|
| Q |
219 |
cctaactgctctcataacaatagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggattacacaccagttcaactgca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39574403 |
cctaactgctctcataacaatagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggattacacaccagttcaactgca |
39574502 |
T |
|
| Q |
319 |
atagtcaatcttttacgctgctcagttgatagaccgttaatacctgggagaccaacatatgcatccctcaatgggttcaactccactagctccatgactt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39574503 |
atagtcaatcttttacgctgctcagttgatagaccgttaatacctgggagaccaacatatgcatccctcaatgggttcaactccactagctccatgactt |
39574602 |
T |
|
| Q |
419 |
cctcaacaaacatctgtaaccattggtcagctccaaactattcttgcttccaacagaataat |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39574603 |
cctcaacaaacatctgtaaccattggtcagctccaaactattcttgcttccaacaaaataat |
39574664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 136 - 447
Target Start/End: Original strand, 39588788 - 39589099
Alignment:
| Q |
136 |
tttacctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaactgctctcataa |
235 |
Q |
| |
|
|||||||| || ||||||||||| |||| |||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
39588788 |
tttacctcgtcaaaagattcaaatatatgaatgctgggctgatgaatggtacaaacaattgttcttcctgtgtccactatgtttctaactgctctcataa |
39588887 |
T |
|
| Q |
236 |
caatagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggattacacaccagttcaactgcaatagtcaatcttttacg |
335 |
Q |
| |
|
|||||| |||||| |||||||||| ||| ||||||||||||||||||||||| |||||||||||| ||| | |||||||||| ||||| ||||| || |
|
|
| T |
39588888 |
caatagatgcagcccttgcatctagccccgaagttggctcatccatgaatattatagaaggattagccactaactcaactgcaactgtcaaccttttgcg |
39588987 |
T |
|
| Q |
336 |
ctgctcagttgatagaccgttaatacctgggagaccaacatatgcatccctcaatgggttcaactccactagctccatgacttcctcaacaaacatctgt |
435 |
Q |
| |
|
||||| || |||||||| ||| ||||| | || ||| ||||||||| | ||||| | |||||| ||||||||||||||||||| |||||||| |
|
|
| T |
39588988 |
ttgctccgtcgatagaccactaacccctggcaatccgacaattgcatccctaagcgggtttagctccacaagctccatgacttcctcaatgaacatctgc |
39589087 |
T |
|
| Q |
436 |
aaccattggtca |
447 |
Q |
| |
|
||||||| |||| |
|
|
| T |
39589088 |
aaccattagtca |
39589099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 139 - 354
Target Start/End: Original strand, 39547078 - 39547293
Alignment:
| Q |
139 |
acctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaactgctctcataacaa |
238 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| |||||||| |||||||| |||| ||||||||||||||| ||| |||||||||||| ||||||||||| |
|
|
| T |
39547078 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttccggtgtctactgtgttcctaactgttctcataacaa |
39547177 |
T |
|
| Q |
239 |
tagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggattacacaccagttcaactgcaatagtcaatcttttacgctg |
338 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||| ||||| ||||| |
|
|
| T |
39547178 |
tagctgcagctcttgcatcaagtccagaagttggctcatccatgaatattatagaaggattagcaaccaactcaactgcaatagtcagccttttgcgctg |
39547277 |
T |
|
| Q |
339 |
ctcagttgatagaccg |
354 |
Q |
| |
|
||| ||||| |||||| |
|
|
| T |
39547278 |
ctccgttgagagaccg |
39547293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 139 - 457
Target Start/End: Original strand, 39537613 - 39537931
Alignment:
| Q |
139 |
acctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaactgctctcataacaa |
238 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| || |||||||||||||| |||| ||||||||| ||||| ||| |||||||||||| ||||||||||| |
|
|
| T |
39537613 |
acctcatcaaaagattcaaatatatcaatgctaggttggtgaatggtacaaacaactgttcttccagtgtctactgtgttcctaactgttctcataacaa |
39537712 |
T |
|
| Q |
239 |
tagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggattacacaccagttcaactgcaatagtcaatcttttacgctg |
338 |
Q |
| |
|
|||||||||| |||||||| | |||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||| ||||| ||||| |
|
|
| T |
39537713 |
tagctgcagcccttgcatcaagtccagaagttggctcatccatgaatattatagaaggattagcaaccaactcaactgcaatagtcagccttttgcgctg |
39537812 |
T |
|
| Q |
339 |
ctcagttgatagaccgttaatacctgggagaccaacatatgcatccctcaatgggttcaactccactagctccatgacttcctcaacaaacatctgtaac |
438 |
Q |
| |
|
||| ||||| |||| | ||| ||| || || || || |||| | || || ||| |||| ||||| || ||||||||||| |||| |||||||| || |
|
|
| T |
39537813 |
ctccgttgagagactgctaacaccaggtagtcctactaatgcgttccgcagtggtttcagttccacaagttccatgacttcttcaatgaacatctgcaag |
39537912 |
T |
|
| Q |
439 |
cattggtcagctccaaact |
457 |
Q |
| |
|
||| |||||| | |||||| |
|
|
| T |
39537913 |
cataggtcagtttcaaact |
39537931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 139 - 354
Target Start/End: Complemental strand, 39339243 - 39339028
Alignment:
| Q |
139 |
acctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaactgctctcataacaa |
238 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| |||||||| || ||||| |||| ||||||||| ||||| ||| |||||||||||| ||||||||||| |
|
|
| T |
39339243 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggattgtacaaacaactgttcttccagtgtctactgtgttcctaactgttctcataacaa |
39339144 |
T |
|
| Q |
239 |
tagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggattacacaccagttcaactgcaatagtcaatcttttacgctg |
338 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||||| || ||||||||| |||| |||||||||| ||||| ||||| ||||| |
|
|
| T |
39339143 |
tagctgcagcccttgcatctagcccagaagttggctcatccatgaatattattgaaggattagcaaccaactcaactgcaacagtcagccttttgcgctg |
39339044 |
T |
|
| Q |
339 |
ctcagttgatagaccg |
354 |
Q |
| |
|
||| ||||| |||||| |
|
|
| T |
39339043 |
ctccgttgagagaccg |
39339028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 139 - 341
Target Start/End: Complemental strand, 39366666 - 39366464
Alignment:
| Q |
139 |
acctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaactgctctcataacaa |
238 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| |||||||| |||||||| |||| |||||||||||||| ||| ||||||||||||||||||| || | |
|
|
| T |
39366666 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaacagttcttccggtgtcaactgtgttcctaactgctctcatcacta |
39366567 |
T |
|
| Q |
239 |
tagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggattacacaccagttcaactgcaatagtcaatcttttacgctg |
338 |
Q |
| |
|
|||||||||| || ||||||| ||||||||||||||||||||||||||| || ||||||||| |||| ||||||||||| ||| | ||||| ||||| |
|
|
| T |
39366566 |
tagctgcagccctcgcatctagcccagaagttggctcatccatgaatattattgaaggattagctaccaattcaactgcaacagttagccttttgcgctg |
39366467 |
T |
|
| Q |
339 |
ctc |
341 |
Q |
| |
|
||| |
|
|
| T |
39366466 |
ctc |
39366464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 139 - 442
Target Start/End: Original strand, 39563709 - 39564012
Alignment:
| Q |
139 |
acctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaactgctctcataacaa |
238 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| |||||||| || ||||| |||| ||||||||| |||| ||| |||||||||||| |||||| |||| |
|
|
| T |
39563709 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggatagtacaaacaactgttcttccagtgtttactgtgttcctaactgttctcatcacaa |
39563808 |
T |
|
| Q |
239 |
tagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggattacacaccagttcaactgcaatagtcaatcttttacgctg |
338 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||| |||||||||||||| || ||||||||| |||| ||||||||||| ||||| | ||| ||||| |
|
|
| T |
39563809 |
tagctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagctaccaactcaactgcaattgtcaaccgtttgcgctg |
39563908 |
T |
|
| Q |
339 |
ctcagttgatagaccgttaatacctgggagaccaacatatgcatccctcaatgggttcaactccactagctccatgacttcctcaacaaacatctgtaac |
438 |
Q |
| |
|
||| || || ||||| |||| ||| || || || || |||| | || ||| |||| ||||| || ||||||||||||||||| |||||||| ||| |
|
|
| T |
39563909 |
ctccgtcgagagaccattaacaccaggcagtcctactaatgcgttttgcagtggtttcagttccacaagttccatgacttcctcaacgaacatctgcaac |
39564008 |
T |
|
| Q |
439 |
catt |
442 |
Q |
| |
|
|||| |
|
|
| T |
39564009 |
catt |
39564012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 139 - 433
Target Start/End: Complemental strand, 39354086 - 39353792
Alignment:
| Q |
139 |
acctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaactgctctcataacaa |
238 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| |||||||| || ||||| |||| ||||||||| || || ||| |||| ||||||| |||||| |||| |
|
|
| T |
39354086 |
acctcatcaaaagattcaaatatatcaatgctaggctggtggattgtacaaacaactgttcttcctgtatctactgtgtttctaactgttctcatcacaa |
39353987 |
T |
|
| Q |
239 |
tagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggattacacaccagttcaactgcaatagtcaatcttttacgctg |
338 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| |||||||||||||| || ||||||||| |||| |||||||||| ||||| ||||| ||||| |
|
|
| T |
39353986 |
ctgctgcagcccttgcatctagcccagaagttggttcatccatgaatattattgaaggattagcaaccaactcaactgcaacagtcagccttttgcgctg |
39353887 |
T |
|
| Q |
339 |
ctcagttgatagaccgttaatacctgggagaccaacatatgcatccctcaatgggttcaactccactagctccatgacttcctcaacaaacatct |
433 |
Q |
| |
|
||| |||| |||||| || ||| || || || || |||||| | || ||| |||| ||||| || ||||||||||||||||| ||||||| |
|
|
| T |
39353886 |
ctccattgagagaccgcaaacaccaggaagtcctactaatgcatttcgcagtggtttcagttccacaagttccatgacttcctcaacgaacatct |
39353792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 139 - 325
Target Start/End: Original strand, 1084415 - 1084601
Alignment:
| Q |
139 |
acctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaactgctctcataacaa |
238 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || || || || ||||| || |||| |||||||| ||||| ||| || ||||||||| ||||||||||| |
|
|
| T |
1084415 |
acctcatcaaaagattcaaatatatcaatacttggttgatggatggtgcaaacaacagttcttccagtgtctactgtgctcctaactgttctcataacaa |
1084514 |
T |
|
| Q |
239 |
tagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggattacacaccagttcaactgcaatagtca |
325 |
Q |
| |
|
| ||||| || ||||||||| ||||||||||||||||||||| ||||| |||||||||||| | |||| |||||||||||||||| |
|
|
| T |
1084515 |
tcgctgctgccattgcatctagcccagaagttggctcatccataaatattatagaaggattagaaaccaactcaactgcaatagtca |
1084601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 127 - 299
Target Start/End: Original strand, 39621645 - 39621818
Alignment:
| Q |
127 |
ctctttttgttt-acctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaact |
225 |
Q |
| |
|
|||||||| ||| |||||||| ||||||||||| |||||||| | | || ||||||| ||| |||| |||||||| | |||||||| || |||| |
|
|
| T |
39621645 |
ctctttttatttcacctcatcaaaagattcaaatatatcaatatttgattgatgaatggcacagacaacagttcttccattctccactatatttctaatg |
39621744 |
T |
|
| Q |
226 |
gctctcataacaatagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggatt |
299 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||| ||| |||||||||||||||||||| || || |||||||| |
|
|
| T |
39621745 |
gctctcataacaatagcgacagatcttgcatctagccctgaagttggctcatccatgaacattattgaaggatt |
39621818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 296
Target Start/End: Original strand, 42132579 - 42132735
Alignment:
| Q |
140 |
cctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaactgctctcataacaat |
239 |
Q |
| |
|
||||||| |||| |||||| ||||||||||| || |||||||| || ||||||| ||||| || ||||| ||| |||| || || | || ||| ||||| |
|
|
| T |
42132579 |
cctcatcaaaagcttcaaaaatatcaatgcttggttggtgaattgtgcacacaacagttctccctgtgtctactgtgtttctcacagttcgcatcacaat |
42132678 |
T |
|
| Q |
240 |
agctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaagg |
296 |
Q |
| |
|
|| || ||||| ||||| | || || ||||| ||||||||||| ||||| ||||| |
|
|
| T |
42132679 |
ggcagcggctctagcatcaaggcctgatgttggttcatccatgaagatgattgaagg |
42132735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 7e-50; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 138 - 442
Target Start/End: Original strand, 44233574 - 44233878
Alignment:
| Q |
138 |
tacctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaactgctctcataaca |
237 |
Q |
| |
|
||||||||| || | |||||| || |||||||| ||||| || ||||||||||||| ||||||||| ||||||||| ||||||| || | |||||||||| |
|
|
| T |
44233574 |
tacctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataaca |
44233673 |
T |
|
| Q |
238 |
atagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggattacacaccagttcaactgcaatagtcaatcttttacgct |
337 |
Q |
| |
|
|| || |||||||| |||||||| |||||||| ||||||||||| || || ||||| |||||| ||| ||||||||||||||||||| ||| || |||| |
|
|
| T |
44233674 |
attgcagcagctctagcatctaaaccagaagtaggctcatccataaaaattatagatggattagccacaagttcaactgcaatagtcagtctcttgcgct |
44233773 |
T |
|
| Q |
338 |
gctcagttgatagaccgttaatacctgggagaccaacatatgcatccctcaatgggttcaactccactagctccatgacttcctcaacaaacatctgtaa |
437 |
Q |
| |
|
| |||||||| ||||| | | ||| || | |||||| | | |||||||| ||||| ||||||||| ||||||||||| |||| ||||||||| || |
|
|
| T |
44233774 |
gttcagttgagagaccactcacaccaggcaaaccaactagagagttcctcaatgagttcagctccactagatccatgacttcgtcaataaacatctgcaa |
44233873 |
T |
|
| Q |
438 |
ccatt |
442 |
Q |
| |
|
||||| |
|
|
| T |
44233874 |
ccatt |
44233878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 138 - 434
Target Start/End: Original strand, 44210552 - 44210848
Alignment:
| Q |
138 |
tacctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaactgctctcataaca |
237 |
Q |
| |
|
||||||||| || | |||||| || |||||||| || || || ||||||||||||| ||||||||| ||||||||| ||||||| || | |||||||||| |
|
|
| T |
44210552 |
tacctcatcaaatgcttcaaatatgtcaatgctaggttgatggatggtacacacaactgttcttcctgtgtccactgtgttccttacagttctcataaca |
44210651 |
T |
|
| Q |
238 |
atagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggattacacaccagttcaactgcaatagtcaatcttttacgct |
337 |
Q |
| |
|
|| || |||||||| |||||||| ||||||||||| ||||||||||| || || || |||||| ||| |||||||||||||||||||| |||||||| | |
|
|
| T |
44210652 |
attgcagcagctctagcatctaaaccagaagttggttcatccatgaaaattatggacggattagccactagttcaactgcaatagtcaaccttttacgtt |
44210751 |
T |
|
| Q |
338 |
gctcagttgatagaccgttaatacctgggagaccaacatatgcatccctcaatgggttcaactccactagctccatgacttcctcaacaaacatctg |
434 |
Q |
| |
|
| || ||||| ||||| ||| ||| || | |||||| | |||||||| | ||||| |||||| || ||||| |||||||||| ||||||||| |
|
|
| T |
44210752 |
gttccgttgagagaccactaacaccaggcaaaccaacgagggagtccctcaacgagttcagctccacaagatccattacttcctcaataaacatctg |
44210848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 138 - 442
Target Start/End: Original strand, 44222752 - 44223056
Alignment:
| Q |
138 |
tacctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaactgctctcataaca |
237 |
Q |
| |
|
||||||||| || | |||||| || |||||||| || || || ||||||||||||| ||||||||| ||||||||| ||||||| || | || ||||||| |
|
|
| T |
44222752 |
tacctcatcaaatgcttcaaatatgtcaatgctaggttgatggatggtacacacaactgttcttcccgtgtccactgtgttccttacagttcgcataaca |
44222851 |
T |
|
| Q |
238 |
atagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggattacacaccagttcaactgcaatagtcaatcttttacgct |
337 |
Q |
| |
|
|| || || ||||| |||||||| |||||||| |||||||||||||| || ||||| |||||| ||| ||||| ||||||||||||| ||| || |||| |
|
|
| T |
44222852 |
attgcagccgctctagcatctaaaccagaagtaggctcatccatgaaaattatagatggattagccacaagttcgactgcaatagtcagtctcttgcgct |
44222951 |
T |
|
| Q |
338 |
gctcagttgatagaccgttaatacctgggagaccaacatatgcatccctcaatgggttcaactccactagctccatgacttcctcaacaaacatctgtaa |
437 |
Q |
| |
|
| |||||||| ||||| | | ||| || | |||||| | | |||||| | ||||| ||||||||| ||||||||||| |||| ||||||||| || |
|
|
| T |
44222952 |
gttcagttgagagaccactcacaccaggcaaaccaactagagagttcctcaacgagttcagctccactagatccatgacttcatcaataaacatctgcaa |
44223051 |
T |
|
| Q |
438 |
ccatt |
442 |
Q |
| |
|
||||| |
|
|
| T |
44223052 |
ccatt |
44223056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 138 - 300
Target Start/End: Original strand, 43456922 - 43457084
Alignment:
| Q |
138 |
tacctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaactgctctcataaca |
237 |
Q |
| |
|
|||||| ||||| | |||||||||||| || || ||||||||||| || || |||| ||||||||| ||||| || |||| || |||| ||||||||| |
|
|
| T |
43456922 |
tacctcgtcgaaggcttcaaagatatcgatactaggctggtgaattgtgcagacaactgttcttccagtgtcaacagtgtttctcactgtcctcataaca |
43457021 |
T |
|
| Q |
238 |
atagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggatta |
300 |
Q |
| |
|
|| ||||||||||||||||| | || |||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
43457022 |
attgctgcagctcttgcatcaagacctgaagttggttcatccatgaaaatgattgaaggatta |
43457084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 138 - 300
Target Start/End: Complemental strand, 4501864 - 4501702
Alignment:
| Q |
138 |
tacctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaactgctctcataaca |
237 |
Q |
| |
|
||||||||| || | |||||||||||||||||| || || ||||| || ||||||| ||||||||| || || || |||| || || | ||||||||| |
|
|
| T |
4501864 |
tacctcatcaaaggcttcaaagatatcaatgctaggttgatgaattgtgcacacaactgttcttccagtatcaacagtgtttcttacagtcctcataaca |
4501765 |
T |
|
| Q |
238 |
atagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggatta |
300 |
Q |
| |
|
||||| || ||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4501764 |
atagcagctgctcttgcatctagaccagaagttggctcatccatgaatatgattgaaggatta |
4501702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 455
Target Start/End: Complemental strand, 2887586 - 2887268
Alignment:
| Q |
137 |
ttacctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaactgctctcataac |
236 |
Q |
| |
|
|||||||||| |||| ||| || || ||||| || || || |||||||| || |||| ||||||||| ||||| || |||||||||| | || |||||| |
|
|
| T |
2887586 |
ttacctcatcaaaagcttcgaatatgtcaatacttggttgatgaatggtgcaaacaactgttcttcctgtgtcaaccgtgttcctaacggttcgcataac |
2887487 |
T |
|
| Q |
237 |
aatagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggattacacaccagttcaactgcaatagtcaatcttttacgc |
336 |
Q |
| |
|
||| || |||||||| |||||||| ||||| || |||||||||||||| || || || ||||| ||| | ||||||||||||||| | || || || |
|
|
| T |
2887486 |
aattgcagcagctctagcatctaatccagatgtaggctcatccatgaaaattatggatggattggccactaattcaactgcaatagttagcctcttgcgt |
2887387 |
T |
|
| Q |
337 |
tgctcagttgatagaccgttaatacctgggagaccaacatatgcatccctcaatgggttcaactccactagctccatgacttcctcaacaaacatctgta |
436 |
Q |
| |
|
|| || ||||| ||||| || | ||| || | |||||| | | | ||||||||||| | ||||||||| |||||||||||||||| ||||||| | |
|
|
| T |
2887386 |
tgttcggttgaaagaccattcacaccaggcaaaccaaccaaagagtttctcaatgggttgagctccactagttccatgacttcctcaatgaacatctaca |
2887287 |
T |
|
| Q |
437 |
accattggtcagctccaaa |
455 |
Q |
| |
|
|||||| |||| |||||| |
|
|
| T |
2887286 |
accatttatcagatccaaa |
2887268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 137 - 323
Target Start/End: Original strand, 2896768 - 2896954
Alignment:
| Q |
137 |
ttacctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaactgctctcataac |
236 |
Q |
| |
|
|||||||||| |||| ||| || || ||||| || || || |||||||| || |||| ||||||||| ||||| || |||||||||||| || |||||| |
|
|
| T |
2896768 |
ttacctcatcaaaagcttcgaatatgtcaatacttggttgatgaatggtgcaaacaactgttcttcctgtgtcaaccgtgttcctaactgttcgcataac |
2896867 |
T |
|
| Q |
237 |
aatagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggattacacaccagttcaactgcaatagt |
323 |
Q |
| |
|
||| || |||||||| |||||||| ||||| || |||||||||||||| || || || ||||| ||| | ||||||||||||||| |
|
|
| T |
2896868 |
aattgcagcagctctagcatctaatccagatgtaggctcatccatgaaaattatggatggattggccactaattcaactgcaatagt |
2896954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 137 - 284
Target Start/End: Complemental strand, 2878063 - 2877916
Alignment:
| Q |
137 |
ttacctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaactgctctcataac |
236 |
Q |
| |
|
|||||||||| ||||||||||| || || || || || || ||||||||||| |||| ||||||||| ||||| || |||||||||| | || |||||| |
|
|
| T |
2878063 |
ttacctcatcaaaagattcaaatatgtcgatacttggttgatgaatggtacaaacaactgttcttcctgtgtcaaccgtgttcctaacggttcgcataac |
2877964 |
T |
|
| Q |
237 |
aatagctgcagctcttgcatctaacccagaagttggctcatccatgaa |
284 |
Q |
| |
|
||| || |||||||| |||||||| ||||| || ||||| |||||||| |
|
|
| T |
2877963 |
aattgcagcagctctagcatctaatccagatgtaggctcgtccatgaa |
2877916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 300
Target Start/End: Original strand, 53668549 - 53668709
Alignment:
| Q |
140 |
cctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaactgctctcataacaat |
239 |
Q |
| |
|
||||||| |||| || ||| ||||||||||| || |||||||| || ||||||| ||||| | ||||| ||| |||| || || | || ||| ||||| |
|
|
| T |
53668549 |
cctcatcaaaagcttaaaaaatatcaatgcttggttggtgaattgtgcacacaaccgttctccatgtgtctactgtgtttctcacagttcgcatcacaat |
53668648 |
T |
|
| Q |
240 |
agctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggatta |
300 |
Q |
| |
|
||| || ||||| ||||| | || | ||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
53668649 |
agcagcggctctagcatcaaggcctaatgttggttcatccatgaagatgattgaaggatta |
53668709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 139 - 320
Target Start/End: Complemental strand, 49773743 - 49773562
Alignment:
| Q |
139 |
acctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaactgctctcataacaa |
238 |
Q |
| |
|
|||||||| |||| ||||| |||||||| || ||||| ||||| || || |||| ||||| || ||||||||| | ||||| |||| |||||| || | |
|
|
| T |
49773743 |
acctcatcaaaagcatcaaatatatcaatactaggctgatgaattgtgcagacaacagttctccctgtgtccactgtattcctcactgttctcattacta |
49773644 |
T |
|
| Q |
239 |
tagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggattacacaccagttcaactgcaat |
320 |
Q |
| |
|
|||| |||||||||||||| | ||||| || || |||||||||||||| ||||| ||||| || |||||||||||||| |
|
|
| T |
49773643 |
tagcagcagctcttgcatcaaggccagaggtaggttcatccatgaatataatagatggattggcaacaagttcaactgcaat |
49773562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 296
Target Start/End: Original strand, 12717006 - 12717162
Alignment:
| Q |
140 |
cctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaactgctctcataacaat |
239 |
Q |
| |
|
||||||| |||| || ||| ||||||||||| || |||||||| || ||||||| ||||| || ||||| ||| |||| || || | || ||| ||||| |
|
|
| T |
12717006 |
cctcatcaaaagcttaaaaaatatcaatgcttggttggtgaattgtgcacacaacagttctccctgtgtctactgtgtttctcacagttcacatcacaat |
12717105 |
T |
|
| Q |
240 |
agctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaagg |
296 |
Q |
| |
|
||| || ||||| ||||| | || || ||||| ||||||||||| ||||| ||||| |
|
|
| T |
12717106 |
agcagcggctctagcatcaaggcctgatgttggttcatccatgaagatgattgaagg |
12717162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 287
Target Start/End: Original strand, 2160289 - 2160371
Alignment:
| Q |
205 |
gtgtccactatgttcctaactgctctcataacaatagctgcagctcttgcatctaacccagaagttggctcatccatgaatat |
287 |
Q |
| |
|
||||| ||| ||||||| |||| |||||| ||||| || || ||||| ||||| | ||||| |||||||||||||||||||| |
|
|
| T |
2160289 |
gtgtcaactgtgttcctcactgttctcattacaattgcagctgctctagcatcaaggccagaggttggctcatccatgaatat |
2160371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 299
Target Start/End: Original strand, 41687150 - 41687311
Alignment:
| Q |
138 |
tacctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaactgctctcataaca |
237 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| || |||||||| || || || | ||||| || || ||| || | || || || | | ||||||| |
|
|
| T |
41687150 |
tacctcatcaaaagattcaaatatatcaatgcttggttggtgaattgtgcagaccacagttctccctgtatccgctgtatttctgacagtacgcataaca |
41687249 |
T |
|
| Q |
238 |
atagctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaaggatt |
299 |
Q |
| |
|
|| ||||||||||| ||||| | || || || ||||||||||| || ||||| |||||||| |
|
|
| T |
41687250 |
attgctgcagctctggcatcaaggcctgatgtaggctcatccataaagatgattgaaggatt |
41687311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0210 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0210
Description:
Target: scaffold0210; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 140 - 296
Target Start/End: Complemental strand, 8919 - 8763
Alignment:
| Q |
140 |
cctcatcgaaagattcaaagatatcaatgctgggctggtgaatggtacacacaattgttcttccggtgtccactatgttcctaactgctctcataacaat |
239 |
Q |
| |
|
||||||| |||| || ||| |||||||| || || |||||||| || ||||||| |||| || ||||| ||| |||| || || | || ||| ||||| |
|
|
| T |
8919 |
cctcatcaaaagcttaaaaaatatcaatacttggttggtgaattgtgcacacaacatttctccctgtgtctactgtgtttctcacagttcgcatcacaat |
8820 |
T |
|
| Q |
240 |
agctgcagctcttgcatctaacccagaagttggctcatccatgaatatgatagaagg |
296 |
Q |
| |
|
||| |||||||| ||||| | || || | ||| ||||||||||||||||| ||||| |
|
|
| T |
8819 |
agcagcagctctagcatcaaggcctgatgatggttcatccatgaatatgattgaagg |
8763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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