View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19664_low_11 (Length: 328)

Name: NF19664_low_11
Description: NF19664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19664_low_11
NF19664_low_11
[»] chr2 (8 HSPs)
chr2 (16-234)||(37134373-37134591)
chr2 (16-59)||(22570937-22570980)
chr2 (20-66)||(43214565-43214611)
chr2 (16-59)||(21104482-21104525)
chr2 (20-62)||(25933562-25933604)
chr2 (14-59)||(18300972-18301017)
chr2 (17-49)||(5588117-5588149)
chr2 (21-49)||(14824158-14824186)
[»] chr4 (5 HSPs)
chr4 (20-65)||(52721259-52721303)
chr4 (14-59)||(3403648-3403693)
chr4 (21-49)||(51674868-51674896)
chr4 (19-59)||(53322337-53322377)
chr4 (14-66)||(55901212-55901264)
[»] chr5 (4 HSPs)
chr5 (13-59)||(5612514-5612560)
chr5 (20-49)||(26691626-26691655)
chr5 (20-49)||(26961358-26961387)
chr5 (20-64)||(30777601-30777645)
[»] chr3 (9 HSPs)
chr3 (13-59)||(21157801-21157847)
chr3 (16-59)||(30226420-30226463)
chr3 (20-62)||(6134461-6134503)
chr3 (17-59)||(38889155-38889197)
chr3 (20-49)||(29915871-29915900)
chr3 (20-49)||(29965024-29965053)
chr3 (20-53)||(49419241-49419274)
chr3 (20-64)||(52121175-52121219)
chr3 (21-49)||(52684211-52684239)
[»] chr7 (1 HSPs)
chr7 (20-62)||(1043150-1043192)
[»] chr1 (4 HSPs)
chr1 (14-64)||(13013065-13013115)
chr1 (20-49)||(2472933-2472962)
chr1 (16-49)||(3708354-3708387)
chr1 (22-62)||(8829789-8829829)
[»] chr6 (2 HSPs)
chr6 (21-66)||(234299-234344)
chr6 (16-49)||(13607860-13607893)
[»] chr8 (2 HSPs)
chr8 (14-66)||(12357882-12357933)
chr8 (14-66)||(12359010-12359061)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 37134373 - 37134591
Alignment:
Q  16 cagaggatacgatacgtcatctattttgaagtatttgggcttcagagcttacatcatatgtgccttaacattactatatcataaatataattaaatatac 115  Q
    ||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37134373 cagaggatacggtacgtcatctattttgaagtatctgggctttagagcttacatcatatgtgccttaacattactatatcataaatataactaaatatac 37134472  T
Q  116 gttgagagtattttatttacatttagtgaagaaagaagatgataaacgcgtctaaagatgcaacacaaagcatgcaacgcggagcgaaatgattgctaca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37134473 gttgagagtattttatttacatttagtgaagaaagaagatgataaacgcgtctaaagatgcaacacaaagcatgtaacgcggagcgaaatgattgctaca 37134572  T
Q  216 cctttaattgcacaaatca 234  Q
    |||||||||||||||||||    
T  37134573 cctttaattgcacaaatca 37134591  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 22570980 - 22570937
Alignment:
Q  16 cagaggatacgatacgtcatctattttgaagtatttgggcttca 59  Q
    ||||||||||| |||||||||||||||||||||| |||||||||    
T  22570980 cagaggatacggtacgtcatctattttgaagtatctgggcttca 22570937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 43214611 - 43214565
Alignment:
Q  20 ggatacgatacgtcatctattttgaagtatttgggcttcagagctta 66  Q
    ||||||||||||||||| |||||||||||| ||| ||||||||||||    
T  43214611 ggatacgatacgtcatccattttgaagtatctggacttcagagctta 43214565  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 21104525 - 21104482
Alignment:
Q  16 cagaggatacgatacgtcatctattttgaagtatttgggcttca 59  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||||    
T  21104525 cagaggatacgatacgtcatccattttaaagtattggggcttca 21104482  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 25933604 - 25933562
Alignment:
Q  20 ggatacgatacgtcatctattttgaagtatttgggcttcagag 62  Q
    ||||||||||| ||||| |||||||||||| ||||||||||||    
T  25933604 ggatacgatacatcatccattttgaagtatatgggcttcagag 25933562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 18301017 - 18300972
Alignment:
Q  14 cacagaggatacgatacgtcatctattttgaagtatttgggcttca 59  Q
    ||||| ||||||||||||||||| ||||||||||||  ||||||||    
T  18301017 cacaggggatacgatacgtcatccattttgaagtatcagggcttca 18300972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 5588149 - 5588117
Alignment:
Q  17 agaggatacgatacgtcatctattttgaagtat 49  Q
    |||||||||||||||||||| ||||||||||||    
T  5588149 agaggatacgatacgtcatccattttgaagtat 5588117  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 14824186 - 14824158
Alignment:
Q  21 gatacgatacgtcatctattttgaagtat 49  Q
    |||||||||||||||||||||||||||||    
T  14824186 gatacgatacgtcatctattttgaagtat 14824158  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 52721303 - 52721259
Alignment:
Q  20 ggatacgatacgtcatctattttgaagtatttgggcttcagagctt 65  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  52721303 ggatacgatacgtcatctattttgaagta-ttgggcttcagagctt 52721259  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 3403648 - 3403693
Alignment:
Q  14 cacagaggatacgatacgtcatctattttgaagtatttgggcttca 59  Q
    ||||| ||||||| ||||||||| ||||||||||||| ||||||||    
T  3403648 cacaggggatacggtacgtcatccattttgaagtattggggcttca 3403693  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 51674896 - 51674868
Alignment:
Q  21 gatacgatacgtcatctattttgaagtat 49  Q
    |||||||||||||||||||||||||||||    
T  51674896 gatacgatacgtcatctattttgaagtat 51674868  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 53322377 - 53322337
Alignment:
Q  19 aggatacgatacgtcatctattttgaagtatttgggcttca 59  Q
    |||||||||||||||||| ||||||||||||  ||||||||    
T  53322377 aggatacgatacgtcatccattttgaagtatcggggcttca 53322337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Original strand, 55901212 - 55901264
Alignment:
Q  14 cacagaggatacgatacgtcatctattttgaagtatttgggcttcagagctta 66  Q
    ||||| ||||||||||||||||||||||| ||||||  ||| |||| ||||||    
T  55901212 cacaggggatacgatacgtcatctattttaaagtatcggggtttcatagctta 55901264  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 5612514 - 5612560
Alignment:
Q  13 gcacagaggatacgatacgtcatctattttgaagtatttgggcttca 59  Q
    |||||||| ||||||||||||||| |||||||||||| |||||||||    
T  5612514 gcacagagaatacgatacgtcatccattttgaagtatctgggcttca 5612560  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 26691655 - 26691626
Alignment:
Q  20 ggatacgatacgtcatctattttgaagtat 49  Q
    ||||||||||||||||||||||||||||||    
T  26691655 ggatacgatacgtcatctattttgaagtat 26691626  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 26961387 - 26961358
Alignment:
Q  20 ggatacgatacgtcatctattttgaagtat 49  Q
    ||||||||||||||||||||||||||||||    
T  26961387 ggatacgatacgtcatctattttgaagtat 26961358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 30777601 - 30777645
Alignment:
Q  20 ggatacgatacgtcatctattttgaagtatttgggcttcagagct 64  Q
    ||||||||||||||||| ||||||||||||  |||||||| ||||    
T  30777601 ggatacgatacgtcatccattttgaagtatcggggcttcacagct 30777645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 21157801 - 21157847
Alignment:
Q  13 gcacagaggatacgatacgtcatctattttgaagtatttgggcttca 59  Q
    |||||||| ||||||||||||||| |||||||||||| |||||||||    
T  21157801 gcacagagaatacgatacgtcatccattttgaagtatctgggcttca 21157847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 30226463 - 30226420
Alignment:
Q  16 cagaggatacgatacgtcatctattttgaagtatttgggcttca 59  Q
    |||||||||||||| |||||| |||||||||||| |||||||||    
T  30226463 cagaggatacgataagtcatccattttgaagtatatgggcttca 30226420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 6134461 - 6134503
Alignment:
Q  20 ggatacgatacgtcatctattttgaagtatttgggcttcagag 62  Q
    ||||||||||||||||| ||||||||||||  |||||||||||    
T  6134461 ggatacgatacgtcatccattttgaagtatcagggcttcagag 6134503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 38889155 - 38889197
Alignment:
Q  17 agaggatacgatacgtcatctattttgaagtatttgggcttca 59  Q
    |||||||||||||||||||| ||||||||||||  ||||||||    
T  38889155 agaggatacgatacgtcatccattttgaagtatcagggcttca 38889197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 29915900 - 29915871
Alignment:
Q  20 ggatacgatacgtcatctattttgaagtat 49  Q
    ||||||||||||||||||||||||||||||    
T  29915900 ggatacgatacgtcatctattttgaagtat 29915871  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 29965053 - 29965024
Alignment:
Q  20 ggatacgatacgtcatctattttgaagtat 49  Q
    ||||||||||||||||||||||||||||||    
T  29965053 ggatacgatacgtcatctattttgaagtat 29965024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 49419274 - 49419241
Alignment:
Q  20 ggatacgatacgtcatctattttgaagtatttgg 53  Q
    ||||||||||||||||| ||||||||||||||||    
T  49419274 ggatacgatacgtcatccattttgaagtatttgg 49419241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 52121219 - 52121175
Alignment:
Q  20 ggatacgatacgtcatctattttgaagtatttgggcttcagagct 64  Q
    ||||||||||||||||| ||||||||||||  |||||||| ||||    
T  52121219 ggatacgatacgtcatccattttgaagtatcggggcttcacagct 52121175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 52684239 - 52684211
Alignment:
Q  21 gatacgatacgtcatctattttgaagtat 49  Q
    |||||||||||||||||||||||||||||    
T  52684239 gatacgatacgtcatctattttgaagtat 52684211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 1043150 - 1043192
Alignment:
Q  20 ggatacgatacgtcatctattttgaagtatttgggcttcagag 62  Q
    ||||||||||||||||| ||||||||||||  |||||||||||    
T  1043150 ggatacgatacgtcatccattttgaagtatcggggcttcagag 1043192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 13013065 - 13013115
Alignment:
Q  14 cacagaggatacgatacgtcatctattttgaagtatttgggcttcagagct 64  Q
    ||||| |||||||||| |||||| ||||||||||||| |||||||| ||||    
T  13013065 cacaggggatacgatatgtcatccattttgaagtattggggcttcacagct 13013115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 2472933 - 2472962
Alignment:
Q  20 ggatacgatacgtcatctattttgaagtat 49  Q
    ||||||||||||||||||||||||||||||    
T  2472933 ggatacgatacgtcatctattttgaagtat 2472962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 3708354 - 3708387
Alignment:
Q  16 cagaggatacgatacgtcatctattttgaagtat 49  Q
    ||||||||||||||||||||| ||||||||||||    
T  3708354 cagaggatacgatacgtcatccattttgaagtat 3708387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 8829789 - 8829829
Alignment:
Q  22 atacgatacgtcatctattttgaagtatttgggcttcagag 62  Q
    ||||| ||| || ||||||||||||||||||||||||||||    
T  8829789 atacggtacttcgtctattttgaagtatttgggcttcagag 8829829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 234344 - 234299
Alignment:
Q  21 gatacgatacgtcatctattttgaagtatttgggcttcagagctta 66  Q
    |||||||||||||| | ||||||||||||  |||||||||||||||    
T  234344 gatacgatacgtcaaccattttgaagtatcggggcttcagagctta 234299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 13607860 - 13607893
Alignment:
Q  16 cagaggatacgatacgtcatctattttgaagtat 49  Q
    ||||||||||||||||||||| ||||||||||||    
T  13607860 cagaggatacgatacgtcatccattttgaagtat 13607893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 12357933 - 12357882
Alignment:
Q  14 cacagaggatacgatacgtcatctattttgaagtatttgggcttcagagctta 66  Q
    ||||||||||||| ||||||||| ||||||||||||  |||||||| ||||||    
T  12357933 cacagaggatacg-tacgtcatccattttgaagtatccgggcttcatagctta 12357882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 12359061 - 12359010
Alignment:
Q  14 cacagaggatacgatacgtcatctattttgaagtatttgggcttcagagctta 66  Q
    ||||||||||||| ||||||||| ||||||||||||  |||||||| ||||||    
T  12359061 cacagaggatacg-tacgtcatccattttgaagtatccgggcttcatagctta 12359010  T

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