View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19664_low_2 (Length: 708)
Name: NF19664_low_2
Description: NF19664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19664_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 18 - 696
Target Start/End: Original strand, 51836957 - 51837630
Alignment:
| Q |
18 |
ctttgttcatatttaaacctacgacctcaaactcatattcttttagttcaaatcagttgaac--------tatctaatccctaacaagaaaatatattta |
109 |
Q |
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| T |
51836957 |
ctttgttcagatttaaacctacgacctcaaactcatattcttttagttcaaatcagttgaacacttgaactatctaacccctaacaagaaa--------- |
51837047 |
T |
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| Q |
110 |
caacaaacagggagataatgataccattgtggttgcatatgagagagttaaggagtagagcacaggcaaaaaggagtgttgtatgattgaattggcaagc |
209 |
Q |
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| T |
51837048 |
-------cagggaaataatgataccattgtggttgcatatgagagagttaaggagtagagcacaggcaaaaaggagtgttgtatgattgaattggcaagc |
51837140 |
T |
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| Q |
210 |
ga-aaaaatttt-tgagctaaatcagcagttgtgagcatcagtatcccacaatagacccaagcagcattcaaacgatttctttccccttttcattttctt |
307 |
Q |
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| T |
51837141 |
gacaaaaattttatgagcgaaatcagcagttgtgagcatcagtatcccacaatagacccaagcagcattcaaacgatttctttccccttttcattttctt |
51837240 |
T |
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| Q |
308 |
acaaacaaacatttgctagattttgtttgtattgatgatgtaagcctttaacaaataatttttgctttaggagcttattctttactattcgtaaacagta |
407 |
Q |
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| T |
51837241 |
acaaacaaacatttgctagattttgtttgtattgatgatgtaagcctttaacaaataatttttgctttaggagcttattctttactattcgtaaacagta |
51837340 |
T |
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| Q |
408 |
tataaattaccatgaacttaaaatttttctatataattcactttctttagtttgtttttggt--nnnnnnnnttggcaacttttccacaatagggttcca |
505 |
Q |
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| T |
51837341 |
tataaatcaccatgaactt-aactttttctatataattcactttctttagtttgtttttggtaaaaaaaaaattggcaacttttccacaatagggttcca |
51837439 |
T |
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| Q |
506 |
actagaataatctctttaggtgtagggttttaactgttgtggatactcggcagaggtggatctagattttttatattgatttggataaaatatcaaagaa |
605 |
Q |
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| T |
51837440 |
actagaataatctctttaggtgtagggttttaactgttgtggatactcggcagaggtggatctagacttttgatattgatttggataaaatatcaaagaa |
51837539 |
T |
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| Q |
606 |
acaatatatattaacaaagcgaaattgcgatgcattaaacacaacaacaaaaatggtttaggggtgtctttttaccaacctatcacaggtt |
696 |
Q |
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| T |
51837540 |
ataatatatattaacaaagcgaaattgtgatgcattaaacacaacaacaaaaatggtttaggggtgtctttttaccaacctatcacaggtt |
51837630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 650
Target Start/End: Original strand, 40154788 - 40154847
Alignment:
| Q |
591 |
taaaatatcaaagaaacaatatatattaacaaagcgaaattgcgatgcattaaacacaac |
650 |
Q |
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| T |
40154788 |
taaaatatcaaagaaactatatatattaacaaaacgaacttgagacacattaagcacaac |
40154847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 628
Target Start/End: Complemental strand, 26736627 - 26736567
Alignment:
| Q |
568 |
tagattttttatattgatttggataaaatatcaaagaaacaatatatattaacaaagcgaa |
628 |
Q |
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| T |
26736627 |
tagacttttgatattggtgtggctaaaatatcaaagaaactatatatattaataaagcgaa |
26736567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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