View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19664_low_3 (Length: 622)
Name: NF19664_low_3
Description: NF19664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19664_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 13 - 388
Target Start/End: Original strand, 6490946 - 6491321
Alignment:
| Q |
13 |
tgaactggttaccacaacatgtacaaggagttccgtgacaccactctaaatggcgcagttgatctgatgtacaatgagacggcttcacgacatagggtct |
112 |
Q |
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| T |
6490946 |
tgaactggttaccacaacatgtacaaggagttccgtgacaccactctaaatggcgcagttgatctgatgtacaatgagacggcttcacgacatagggttt |
6491045 |
T |
|
| Q |
113 |
gtttcccctgcattcagattattaagactgccaccatcccagccaagctttgcaagagggagagcaccaaacaattccacgattccaaagatcaagctcc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6491046 |
gtttcccctgcattcagattattaagactgccaccatcccagccaagctttgcaagagggagagcaccaaacaattccacgattccaaagatcaagttcc |
6491145 |
T |
|
| Q |
213 |
cattggttttcaagaaaatcacaccaccatccaagaagctgaagacaacatacaaggccaagaagccgaacttgtttatgtaatgtggtcgagtgatgaa |
312 |
Q |
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| T |
6491146 |
cattggttttcaagaaaatcacaccaccacccaagaagctgaagacaacatacaaggccaagaagccgaacttgtttatgtaatgtggtcgagtgatgaa |
6491245 |
T |
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| Q |
313 |
agtatgttgggtttttccaaacattccagttgtttatctattaccagatttggccatgcggatctttagaccattc |
388 |
Q |
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| T |
6491246 |
agtatgttgggtttttccaaacattccagttgtttatctattaccagattttgccatgcggatctttagaccattc |
6491321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 396 - 606
Target Start/End: Original strand, 6491368 - 6491582
Alignment:
| Q |
396 |
agtagaatcgaacaaatttataccaatttgcttgaaatttatcattatatcattttgttcacttcatatgga--------atgctcaaattagggacgac |
487 |
Q |
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| T |
6491368 |
agtagaatcgaacaaatttataccaatttgcttgaaatttatcattatatcattttgttcacttcatatggaggatcaatatgctcaaattagggacg-- |
6491465 |
T |
|
| Q |
488 |
gacgacggtgaaaacattgttggataatactagaacccttgtgaaagaagttcattttctcagcaccaactaagannnnnnnnnatacaaaccgtgcttt |
587 |
Q |
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| T |
6491466 |
-acgacggtgaatacattgttggataatactagaacccttgtgaaataagttcattttctcagcaccaactaaga-ttttttttatacaaaccgtgcttt |
6491563 |
T |
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| Q |
588 |
aataataaggattcatatc |
606 |
Q |
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| T |
6491564 |
aataataaggattcatatc |
6491582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 16 - 228
Target Start/End: Original strand, 41869759 - 41869970
Alignment:
| Q |
16 |
actggttaccacaacatgtacaaggagttccgtgacaccactctaaatggcgcagttgatctgatgtacaatgagacggcttcacgacatagggtctgtt |
115 |
Q |
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| T |
41869759 |
actggttatcacaatatgtacaaggaataccgtgatactactctaaacggtgctgtggagacaatgtacaacgaaatggcatctcgtcatagggtcagat |
41869858 |
T |
|
| Q |
116 |
tcccctgcattcagattattaagactgccaccatcccagccaagctttgcaagagggagagcaccaaacaattccacgattccaaagatcaagctcccat |
215 |
Q |
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| T |
41869859 |
ttccttgcatccagatcattaagacggccaccatcccagctaatctgtgcaaaagggagagcactaagcagttccacaattccaaa-atcaagttcccct |
41869957 |
T |
|
| Q |
216 |
tggttttcaagaa |
228 |
Q |
| |
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|||| | |||||| |
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| T |
41869958 |
tggtgtacaagaa |
41869970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 25 - 296
Target Start/End: Original strand, 15297552 - 15297822
Alignment:
| Q |
25 |
cacaacatgtacaaggagttccgtgacaccactctaaatggcgcagttgatctgatgtacaatgagacggcttcacgacatagggtctgtttcccctgca |
124 |
Q |
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| T |
15297552 |
cacaacatgtacaaggaataccgcgacactacactaaatggcgctgttgaatacatgtacaatgaaatggcatcacgtcatagagtcaggcatccatgca |
15297651 |
T |
|
| Q |
125 |
ttcagattattaagactgccaccatcccagccaagctttgcaagagggagagcaccaaacaattccacgattccaaagatcaagctcccattggttttca |
224 |
Q |
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| T |
15297652 |
tccagatcatcaagactgccacaatcccagctaacctttgcaaaagggagagcacgaaacagtttcacaactctaaa-atcaagttcccgttggtgttca |
15297750 |
T |
|
| Q |
225 |
agaaaatcacaccaccatccaagaagctgaagacaacatacaaggccaagaagccgaacttgtttatgtaat |
296 |
Q |
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| T |
15297751 |
agaagattaggcccccaaccaggaagctcaagacaacatacaaggcaacaaaacccaacatgtttatgtaat |
15297822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 39709443 - 39709719
Alignment:
| Q |
16 |
actggttaccacaacatgtacaaggagttccgtgacaccactctaaatggcgcagttgatctgatgtacaatgagacggcttcacgacatagggtctgtt |
115 |
Q |
| |
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|||||||| ||||| ||||||||||| | |||||| || |||||||| ||||| || || |||||||| |||| ||| || || ||||||||| | | |
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| T |
39709443 |
actggttatcacaatatgtacaaggaataccgtgatactactctaaacggcgctgtggagacaatgtacaacgagatggcatctcgtcatagggtcaggt |
39709542 |
T |
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| Q |
116 |
tcccctgcattcagattattaagactgccaccatcccagccaagctttgcaagagggagagcaccaaacaattccacgattccaaagatcaagctcccat |
215 |
Q |
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| T |
39709543 |
ttccctgcattcaaatcattaagactgccaccatcccggctaatctgtgcaaaagggagagcactaagcagtttcacaattccaaa-atcaagttccctc |
39709641 |
T |
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| Q |
216 |
tggttttcaagaaaatcacaccaccatccaagaagctgaagacaacatacaaggccaagaagccgaacttgtttatgt |
293 |
Q |
| |
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| T |
39709642 |
tggtgtacaagaagattaggccaccaactaggagcctaaaaacaacctacaaagccaagaagcccaacctgtttatgt |
39709719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 121 - 296
Target Start/End: Original strand, 39718196 - 39718370
Alignment:
| Q |
121 |
tgcattcagattattaagactgccaccatcccagccaagctttgcaagagggagagcaccaaacaattccacgattccaaagatcaagctcccattggtt |
220 |
Q |
| |
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| T |
39718196 |
tgcattcaaatcattaagactgccaccatcccagctaatctgtgcaaaagagagagcactaagcagtttcacaattccaaa-atcaagttccctctggtg |
39718294 |
T |
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| Q |
221 |
ttcaagaaaatcacaccaccatccaagaagctgaagacaacatacaaggccaagaagccgaacttgtttatgtaat |
296 |
Q |
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| T |
39718295 |
tacaagaagattaggccaccaaccaggagcctcaaaacaacctacaaagctaagaagcccaacctgtttatgtaat |
39718370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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