View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19664_low_4 (Length: 610)
Name: NF19664_low_4
Description: NF19664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19664_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 17 - 591
Target Start/End: Complemental strand, 13854783 - 13854204
Alignment:
| Q |
17 |
aaaacatctccaaatacatcctagtttctcttctcataagcttggaaacatgcttccagaagccataaacaccgtctaaagttcgtagctgccctcttac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13854783 |
aaaacatctccaaatacatcctagtttctcttctcataagcttggaaacatgcttccagaagccataaacaccgtctaaagttcgtagttgccctcttac |
13854684 |
T |
|
| Q |
117 |
acttagtatatcttccaaacataaaggtnnnnnnntgtttcaaattagaggaagattcatatttgagacgtgtacttagtgatnnnnnnnnncagggttt |
216 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
13854683 |
acttagtatatcttccaaacataaaggtaaaaaaatgtttcaaattaggggaagattcatatttgagacgtgtacttagtgataaaaaaaa-cagggttt |
13854585 |
T |
|
| Q |
217 |
taagtagcagtcatttgaagagtggccttggtttgcatcgaggtgttctcggtgaagtcagcatataagttacttgaggaaatattgattgtggatggcc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13854584 |
taagtagcagtcatttgaagagtggccttggtttgcatcgaggtgttctcggtgaagtcggcatataagttacttgaggaaatattgattgtggatggcc |
13854485 |
T |
|
| Q |
317 |
ctttgtgcgattctaaggaggcggtgtttcggacgattcggaagagttcaatatcgtccaaggtggtgg------nnnnnnnnnnggaagttactccaca |
410 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
13854484 |
ctttgtgccattctaaggaggcggtgtttcggacgatttggaagagttcaatatcgtccgaggtggtggttttttttctttttttggaagttactccaca |
13854385 |
T |
|
| Q |
411 |
aacttattccaacgacagttaatcttgcaaggaggaattgcttccctttggagaacaatttcaattgtgttttttgtggtggtggtgcaaacatctactc |
510 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
13854384 |
aacttattccaacgacagttaaccttgcaaggaggaattgcttccctttggagaacagtttcaattgtgtgttttgtggtagtggtgcaaacatctactc |
13854285 |
T |
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| Q |
511 |
gccnnnnnnnngcactgtcaagtttttatgttgtggtccaaggtgttgggttggcttgtaccgaatatcattagcccctca |
591 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13854284 |
accttttttttgcactgtcaagtttttatgttgtggtccaaggtgttgggttggcttgtaccgaatatcattagcccctca |
13854204 |
T |
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