View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19664_low_7 (Length: 527)

Name: NF19664_low_7
Description: NF19664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19664_low_7
NF19664_low_7
[»] chr3 (3 HSPs)
chr3 (67-504)||(14174936-14175380)
chr3 (17-504)||(952330-952807)
chr3 (388-487)||(5565189-5565291)
[»] scaffold0007 (1 HSPs)
scaffold0007 (17-504)||(257627-258122)
[»] chr4 (6 HSPs)
chr4 (257-405)||(10715051-10715199)
chr4 (257-405)||(10928821-10928969)
chr4 (17-126)||(10714851-10714959)
chr4 (17-126)||(10928621-10928729)
chr4 (204-239)||(10715002-10715037)
chr4 (204-239)||(10928772-10928807)
[»] chr7 (3 HSPs)
chr7 (25-170)||(40723002-40723148)
chr7 (295-382)||(11637791-11637878)
chr7 (93-189)||(11637602-11637698)
[»] chr1 (3 HSPs)
chr1 (65-155)||(51386767-51386857)
chr1 (271-353)||(22964541-22964622)
chr1 (31-63)||(51386612-51386644)
[»] chr8 (1 HSPs)
chr8 (271-351)||(38442662-38442742)
[»] chr2 (1 HSPs)
chr2 (271-353)||(38955295-38955376)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 67 - 504
Target Start/End: Original strand, 14174936 - 14175380
Alignment:
Q  67 aaagtgtaaaccaaatgagtagaaggaatgcaaatattacttgtgaaaaaattgaaccatgttggcagaaccttcactgctgcaatcatccttattctct 166  Q
    ||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||| | | |||||||||||||||||||||||||| ||||||    
T  14174936 aaagtgtaaaccaaatgagaagaaggaatgtaaatattacctgtgaaaaaattgaaccatgtcgacggaaccttcactgctgcaatcatccttcttctct 14175035  T
Q  167 gttgttcgttgaccatcatcagcaattttctccgct-------gtcgtcgatgaatttcgtaaatttgaaatctttttcgnnnnnnnnnnncatctgggt 259  Q
    ||||| || ||||||||| |||  ||||||||||||       |||||||| ||||||||||||||||||||||||||||           ||||||| |    
T  14175036 gttgtccgctgaccatcaacagtgattttctccgctatccgctgtcgtcgacgaatttcgtaaatttgaaatctttttcgttttttttttgcatctggat 14175135  T
Q  260 tttagtttttataaggagggaagtgaaacctaaccgcggcgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcggagttgacg 359  Q
    |||  ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14175136 tttcatttttataaggagggaagtgaaacctaaccgcggcaatggttttagcgaaggaaacaacaccgacatcattaatttatctccatcggagttgacg 14175235  T
Q  360 gattcagcggcggcggtgatgaatgtttttccgacgcggtggtcaatcaaagtggtgcaactccggcgtggtggaaagcaaatgggttttgtagaggacg 459  Q
    |||||||| |||||||||||||| || |||||||||||||||||||    | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  14175236 gattcagcagcggcggtgatgaaagtgtttccgacgcggtggtcaacgtcaatggtgcaactccggcgtggtggaaagcaaatgggttttgtagaggacg 14175335  T
Q  460 aagaaatgaagacgatgcttttactttaaaggattgaaatgaagg 504  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  14175336 aagaaatgaagacgatgcttttactttagaggattgaaatgaagg 14175380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 504
Target Start/End: Original strand, 952330 - 952807
Alignment:
Q  17 ataataagatgcataacaaaattgaaacatgtacaataataaattaagagaaagtgtaaaccaaatgagtagaaggaatgcaaatattacttgtgaaaaa 116  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| ||||||||     
T  952330 ataatcagatgcagaacaaaattgaaacatgtacaataataaattaggagaaagtgtaaaccaaatgagaagaaggaatgtaaatattacctgtgaaaag 952429  T
Q  117 attgaaccatgttggcagaaccttcactgctgcaatcatccttattctctgttgttcgttgaccatcatcagcaattttc-------tccgctgtcgtcg 209  Q
    |||||||||||| ||| ||| |||||||||||||||||||||| || ||||||||||| | |||||||||| | ||||||       |||||||||||||    
T  952430 attgaaccatgtcggcggaatcttcactgctgcaatcatccttcttttctgttgttcgctaaccatcatcaacgattttctccgctatccgctgtcgtcg 952529  T
Q  210 atgaatttcgtaaatttgaaatctttttcgnnnnnnnnnnncatctgggttttagtttttataaggagggaagtgaaa-cctaaccgcggcgatggtttt 308  Q
    | ||||||||||||||||||||||||||||            ||||||||||| |||||| ||||||||||||||||| ||||||||||| |||||||||    
T  952530 acgaatttcgtaaatttgaaatctttttcgtttttttttt--atctgggttttcgtttttgtaaggagggaagtgaaaccctaaccgcggtgatggtttt 952627  T
Q  309 agcgaagaaaacaacaccgacatcattaatttatctccatcggagttgacggattcagcggcggcggtgatgaatgtttttccgacgcggtggtcaatca 408  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||  |    
T  952628 agcgaagaaaataacaccgacatcattaatttatctccatcggagttgacggattcagcggcggcggtgatgaaaatgtttccgacgcggtggtcaacga 952727  T
Q  409 aagtggtgcaactccggcgtggtggaaagcaaatgggttttgtagaggacgaagaaatgaagacgatgcttttactttaaaggattgaaatgaagg 504  Q
     ||||||||                ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  952728 cagtggtgc----------------aaagcaaatgggttttgtagaggacgaagaaatgaagacgatgtttttactttagaggattgaaatgaagg 952807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 388 - 487
Target Start/End: Complemental strand, 5565291 - 5565189
Alignment:
Q  388 ttccgacgcggtggtcaatcaaagtggtgcaactccggcgtggtggaaagcaaatgggttttgtagaggacgaagaaatgaagac---gatgcttttact 484  Q
    ||||||||| ||||||||  |  |||||||||||||||||||||||||| ||| |||||||||||||||||||||| || |||||   ||||||||||||    
T  5565291 ttccgacgcagtggtcaacgacggtggtgcaactccggcgtggtggaaaacaagtgggttttgtagaggacgaagagattaagactatgatgcttttact 5565192  T
Q  485 tta 487  Q
    |||    
T  5565191 tta 5565189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 504
Target Start/End: Complemental strand, 258122 - 257627
Alignment:
Q  17 ataataagatgcataacaaaattgaaacatgtacaataataaattaagagaaagtgtaaaccaaatgagtagaaggaatgcaaatattacttgtgaaaaa 116  Q
    ||||| ||||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||| |||||| || |||||||||    
T  258122 ataatcagatgcagaataaaattgaaacatgtacaataataaattaggagaaagtgtaaactaaatgagaagaaggaatgtaaatatcacctgtgaaaaa 258023  T
Q  117 attgaaccatgttggcagaaccttcactgctgcaatcatccttattctctgttgttcgttgaccatcatcagcaattttctc-------cgctgtcgtcg 209  Q
    ||| |||||||| ||| |||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||||       |||||| ||||    
T  258022 attaaaccatgtcggcggaaccttcactgctgcaatcatccttcttctctgttgtccgctgaccatcatcagcgattttctctgctatccgctgttgtcg 257923  T
Q  210 atgaatttcgtaaatttgaaatctttttcgnnnnnnnnnnncatctgggttttagtttttataaggagggaagtgaaacctaaccgcggcgatggtttta 309  Q
    |  ||||| ||||||||||||||||||||            ||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  257922 acaaattttgtaaatttgaaatctttttc--tttgttttttcatctggattttcgtttttataaggagggaagtgaaacataaccgcggcgatggtttta 257825  T
Q  310 gcgaagaaaacaacaccgacatcattaatttatctccatcggagttgacggattcagcggcggcggtgatgaatgtttttccgacgcggtggtcaatcaa 409  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||  ||||||||||||| || |||||||||| ||||||||  |     
T  257824 gcgaagaaaacaacaccaacatcattaatttatctccatcggagttgacggatttagcaacggcggtgatgaaagtgtttccgacgcagtggtcaacgac 257725  T
Q  410 agtggtgcaactccggcgtggtggaaagcaaatgggttttgtagaggacgaagaaatgaagacgatgctttta---ctttaaaggattgaaatgaagg 504  Q
    ||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||    
T  257724 agtggtttaactccggcgtggaggaaagcaaatgggttttgtagaggacgaagaaatgaagacgatgcttttacttctttagaggattgaaatgaagg 257627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 5e-57; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 257 - 405
Target Start/End: Original strand, 10715051 - 10715199
Alignment:
Q  257 ggttttagtttttataaggagggaagtgaaacctaaccgcggcgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcggagttg 356  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||    
T  10715051 ggttttcgtttttataagaagggaagtgaatcctaaccgcggcgatggttttagtgaagacaacaacaccaacatcattaatttatctccatcggagttg 10715150  T
Q  357 acggattcagcggcggcggtgatgaatgtttttccgacgcggtggtcaa 405  Q
    |||||||||||||||||||||||||| || ||| |||||||||||||||    
T  10715151 acggattcagcggcggcggtgatgaaagtgttttcgacgcggtggtcaa 10715199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 257 - 405
Target Start/End: Original strand, 10928821 - 10928969
Alignment:
Q  257 ggttttagtttttataaggagggaagtgaaacctaaccgcggcgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcggagttg 356  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||    
T  10928821 ggttttcgtttttataagaagggaagtgaatcctaaccgcggcgatggttttagtgaagacaacaacaccaacatcattaatttatctccatcggagttg 10928920  T
Q  357 acggattcagcggcggcggtgatgaatgtttttccgacgcggtggtcaa 405  Q
    |||||||||||||||||||||||||| || ||| |||||||||||||||    
T  10928921 acggattcagcggcggcggtgatgaaagtgttttcgacgcggtggtcaa 10928969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 10714851 - 10714959
Alignment:
Q  17 ataataagatgcataacaaaattgaaacatgtacaataataaattaagagaaagtgtaaaccaaatgagtagaaggaatgcaaatattacttgtgaaaaa 116  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||| ||||||||| |||||||||    
T  10714851 ataatcagatgcagaacaaaattgaaacatgtacaataataaattaggagaaagtgtaaaccaaatgagaaaaaggaatgtaaatattac-tgtgaaaaa 10714949  T
Q  117 attgaaccat 126  Q
    ||||||||||    
T  10714950 attgaaccat 10714959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 10928621 - 10928729
Alignment:
Q  17 ataataagatgcataacaaaattgaaacatgtacaataataaattaagagaaagtgtaaaccaaatgagtagaaggaatgcaaatattacttgtgaaaaa 116  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||| ||||||||| |||||||||    
T  10928621 ataatcagatgcagaacaaaattgaaacatgtacaataataaattaggagaaagtgtaaaccaaatgagaaaaaggaatgtaaatattac-tgtgaaaaa 10928719  T
Q  117 attgaaccat 126  Q
    ||||||||||    
T  10928720 attgaaccat 10928729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 239
Target Start/End: Original strand, 10715002 - 10715037
Alignment:
Q  204 tcgtcgatgaatttcgtaaatttgaaatctttttcg 239  Q
    ||||||| ||||||||||||||||||||||||||||    
T  10715002 tcgtcgacgaatttcgtaaatttgaaatctttttcg 10715037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 239
Target Start/End: Original strand, 10928772 - 10928807
Alignment:
Q  204 tcgtcgatgaatttcgtaaatttgaaatctttttcg 239  Q
    ||||||| ||||||||||||||||||||||||||||    
T  10928772 tcgtcgacgaatttcgtaaatttgaaatctttttcg 10928807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 7e-44; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 40723148 - 40723002
Alignment:
Q  25 atgcataacaaaattgaaacatgtacaataataaattaagagaaagtgtaaaccaaatgagtagaaggaatgcaaatattacttgtgaaaaaattgaacc 124  Q
    ||||| || ||||||||||||||||||||||||||||| ||||| ||||||||| |||||| |||||||||| ||||||||| |||||||||||| ||||    
T  40723148 atgcagaataaaattgaaacatgtacaataataaattaggagaacgtgtaaaccgaatgagaagaaggaatgtaaatattacctgtgaaaaaattaaacc 40723049  T
Q  125 atgttggcag-aaccttcactgctgcaatcatccttattctctgttg 170  Q
    |||| ||||| ||||||||||||||||| ||||||| ||||||||||    
T  40723048 atgtcggcagaaaccttcactgctgcaaccatccttcttctctgttg 40723002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 295 - 382
Target Start/End: Original strand, 11637791 - 11637878
Alignment:
Q  295 gcggcgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcggagttgacggattcagcggcggcggtgatgaa 382  Q
    |||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  11637791 gcggcgatggttatagcgaagaaaacaacaccggcaacattaatttatctccatcggagttgacggatccagcggcggcggtgatgaa 11637878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 11637602 - 11637698
Alignment:
Q  93 aatgcaaatattacttgtgaaaaaattgaaccatgttggcagaaccttcactgctgcaatcatccttattctctgttgttcgttgaccatcatcagc 189  Q
    |||| ||||||||| ||||||||||||||||||||| |||  ||||||||||||||||||||||||| ||||||| | | ||  |||||||||||||    
T  11637602 aatgtaaatattacctgtgaaaaaattgaaccatgtcggcgtaaccttcactgctgcaatcatccttcttctctgctttccgccgaccatcatcagc 11637698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 65 - 155
Target Start/End: Original strand, 51386767 - 51386857
Alignment:
Q  65 agaaagtgtaaaccaaatgagtagaaggaatgcaaatattacttgtgaaaaaattgaaccatgttggcagaaccttcactgctgcaatcat 155  Q
    |||||| |||||||||| ||| |||| ||||| ||||||||| | |||||||||||||  |||| ||| ||||||||||||||||||||||    
T  51386767 agaaagggtaaaccaaaggagaagaaagaatgtaaatattacctatgaaaaaattgaatgatgtcggcggaaccttcactgctgcaatcat 51386857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 353
Target Start/End: Complemental strand, 22964622 - 22964541
Alignment:
Q  271 taaggagggaagtgaaacctaaccgcggcgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcggag 353  Q
    ||||||||||| |||||  |||| | || |||||||| || ||||||||||||||| | | ||||||||||||||||||||||    
T  22964622 taaggagggaattgaaaa-taacaggggtgatggtttcagagaagaaaacaacaccaaaaacattaatttatctccatcggag 22964541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 51386612 - 51386644
Alignment:
Q  31 aacaaaattgaaacatgtacaataataaattaa 63  Q
    ||||||||||||||||||||| |||||||||||    
T  51386612 aacaaaattgaaacatgtacagtaataaattaa 51386644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 271 - 351
Target Start/End: Original strand, 38442662 - 38442742
Alignment:
Q  271 taaggagggaagtgaaacctaaccgcggcgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcgg 351  Q
    |||| |||||||||||||||||| | | | | ||||| |||||||||||||||||| | | ||||||||||||||||||||    
T  38442662 taagtagggaagtgaaacctaacagggacaagggtttcagcgaagaaaacaacaccaaaaacattaatttatctccatcgg 38442742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 353
Target Start/End: Original strand, 38955295 - 38955376
Alignment:
Q  271 taaggagggaagtgaaacctaaccgcggcgatggttttagcgaagaaaacaacaccgacatcattaatttatctccatcggag 353  Q
    |||||| ||||||||||  |||| | ||||||||||| || |||||||||||||||   | ||||||||||||||||||||||    
T  38955295 taaggatggaagtgaaaa-taacaggggcgatggtttcagagaagaaaacaacaccagaaacattaatttatctccatcggag 38955376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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